Literature DB >> 15489292

RNA polymerase I transcription and pre-rRNA processing are linked by specific SSU processome components.

Jennifer E G Gallagher1, David A Dunbar, Sander Granneman, Brianna M Mitchell, Yvonne Osheim, Ann L Beyer, Susan J Baserga.   

Abstract

Sequential events in macromolecular biosynthesis are often elegantly coordinated. The small ribosomal subunit (SSU) processome is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome. We have found that a subcomplex of SSU processome proteins, the t-Utps, is also required for optimal rRNA transcription in vivo in the yeast Saccharomyces cerevisiae. The t-Utps are ribosomal chromatin (r-chromatin)-associated, and they exist in a complex in the absence of the U3 snoRNA. Transcription is required neither for the formation of the subcomplex nor for its r-chromatin association. The t-Utps are associated with the pre-18S rRNAs independent of the presence of the U3 snoRNA. This association may thus represent an early step in the formation of the SSU processome. Our results indicate that rRNA transcription and pre-rRNA processing are coordinated via specific components of the SSU processome.

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Year:  2004        PMID: 15489292      PMCID: PMC529538          DOI: 10.1101/gad.1226604

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  53 in total

1.  60S pre-ribosome formation viewed from assembly in the nucleolus until export to the cytoplasm.

Authors:  Tracy A Nissan; Jochen Bassler; Elisabeth Petfalski; David Tollervey; Ed Hurt
Journal:  EMBO J       Date:  2002-10-15       Impact factor: 11.598

Review 2.  Ribosome biogenesis: ribosomal RNA synthesis as a package deal.

Authors:  Brenda A Peculis
Journal:  Curr Biol       Date:  2002-09-17       Impact factor: 10.834

Review 3.  Polyadenylation: a tail of two complexes.

Authors:  Nick Proudfoot; Justin O'Sullivan
Journal:  Curr Biol       Date:  2002-12-23       Impact factor: 10.834

Review 4.  RNA polymerase II conducts a symphony of pre-mRNA processing activities.

Authors:  Kenneth James Howe
Journal:  Biochim Biophys Acta       Date:  2002-09-13

5.  90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors.

Authors:  Paola Grandi; Vladimir Rybin; Jochen Bassler; Elisabeth Petfalski; Daniela Strauss; Martina Marzioch; Thorsten Schäfer; Bernhard Kuster; Herbert Tschochner; David Tollervey; Anne Claude Gavin; Ed Hurt
Journal:  Mol Cell       Date:  2002-07       Impact factor: 17.970

6.  Components of an interdependent unit within the SSU processome regulate and mediate its activity.

Authors:  Karen A Wehner; Jennifer E G Gallagher; Susan J Baserga
Journal:  Mol Cell Biol       Date:  2002-10       Impact factor: 4.272

7.  Ssf1p prevents premature processing of an early pre-60S ribosomal particle.

Authors:  Alessandro Fatica; Andrew D Cronshaw; Mensur Dlakić; David Tollervey
Journal:  Mol Cell       Date:  2002-02       Impact factor: 17.970

8.  Repression of RNA polymerase I transcription by nucleolin is independent of the RNA sequence that is transcribed.

Authors:  Benoit Roger; Andre Moisand; Francois Amalric; Philippe Bouvet
Journal:  J Biol Chem       Date:  2001-12-31       Impact factor: 5.157

9.  The fifth essential DNA polymerase phi in Saccharomyces cerevisiae is localized to the nucleolus and plays an important role in synthesis of rRNA.

Authors:  Kikuo Shimizu; Yasuo Kawasaki; Shin-Ichiro Hiraga; Maki Tawaramoto; Naomi Nakashima; Akio Sugino
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-01       Impact factor: 11.205

Review 10.  Having it both ways: transcription factors that bind DNA and RNA.

Authors:  Laura A Cassiday; L James Maher
Journal:  Nucleic Acids Res       Date:  2002-10-01       Impact factor: 16.971

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  134 in total

1.  Chromatin association and regulation of rDNA transcription by the Ras-family protein RasL11a.

Authors:  Mariaelena Pistoni; Alessandro Verrecchia; Mirko Doni; Ernesto Guccione; Bruno Amati
Journal:  EMBO J       Date:  2010-02-18       Impact factor: 11.598

2.  Myb-binding protein 1a (Mybbp1a) regulates levels and processing of pre-ribosomal RNA.

Authors:  Julia Hochstatter; Michael Hölzel; Michaela Rohrmoser; Lothar Schermelleh; Heinrich Leonhardt; Rebecca Keough; Thomas J Gonda; Axel Imhof; Dirk Eick; Gernot Längst; Attila Németh
Journal:  J Biol Chem       Date:  2012-05-29       Impact factor: 5.157

Review 3.  When ribosomes go bad: diseases of ribosome biogenesis.

Authors:  Emily F Freed; Franziska Bleichert; Laura M Dutca; Susan J Baserga
Journal:  Mol Biosyst       Date:  2010-01-11

4.  Esf2p, a U3-associated factor required for small-subunit processome assembly and compaction.

Authors:  Tran Hoang; Wen-Tao Peng; Emmanuel Vanrobays; Nevan Krogan; Shawna Hiley; Ann L Beyer; Yvonne N Osheim; Jack Greenblatt; Timothy R Hughes; Denis L J Lafontaine
Journal:  Mol Cell Biol       Date:  2005-07       Impact factor: 4.272

5.  RNA polymerase II elongation factors Spt4p and Spt5p play roles in transcription elongation by RNA polymerase I and rRNA processing.

Authors:  D A Schneider; S L French; Y N Osheim; A O Bailey; L Vu; J Dodd; J R Yates; A L Beyer; M Nomura
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-14       Impact factor: 11.205

6.  Interdependence of Pes1, Bop1, and WDR12 controls nucleolar localization and assembly of the PeBoW complex required for maturation of the 60S ribosomal subunit.

Authors:  Michaela Rohrmoser; Michael Hölzel; Thomas Grimm; Anastassia Malamoussi; Thomas Harasim; Mathias Orban; Iris Pfisterer; Anita Gruber-Eber; Elisabeth Kremmer; Dirk Eick
Journal:  Mol Cell Biol       Date:  2007-03-12       Impact factor: 4.272

Review 7.  Ribosome Biogenesis in Plants: From Functional 45S Ribosomal DNA Organization to Ribosome Assembly Factors.

Authors:  Julio Sáez-Vásquez; Michel Delseny
Journal:  Plant Cell       Date:  2019-06-25       Impact factor: 11.277

8.  Deletion of Rnt1p alters the proportion of open versus closed rRNA gene repeats in yeast.

Authors:  Mathieu Catala; Maxime Tremblay; Eric Samson; Antonio Conconi; Sherif Abou Elela
Journal:  Mol Cell Biol       Date:  2007-11-08       Impact factor: 4.272

9.  The growing pre-mRNA recruits actin and chromatin-modifying factors to transcriptionally active genes.

Authors:  Mikael Sjölinder; Petra Björk; Emilia Söderberg; Nafiseh Sabri; Ann-Kristin Ostlund Farrants; Neus Visa
Journal:  Genes Dev       Date:  2005-08-15       Impact factor: 11.361

10.  The nuclear poly(A) polymerase and Exosome cofactor Trf5 is recruited cotranscriptionally to nucleolar surveillance.

Authors:  Maxime Wery; Sabine Ruidant; Stéphanie Schillewaert; Nathalie Leporé; Denis L J Lafontaine
Journal:  RNA       Date:  2009-01-13       Impact factor: 4.942

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