Literature DB >> 12524355

A genome scan for quantitative trait loci in a wild population of red deer (Cervus elaphus).

J Slate1, P M Visscher, S MacGregor, D Stevens, M L Tate, J M Pemberton.   

Abstract

Recent empirical evidence indicates that although fitness and fitness components tend to have low heritability in natural populations, they may nonetheless have relatively large components of additive genetic variance. The molecular basis of additive genetic variation has been investigated in model organisms but never in the wild. In this article we describe an attempt to map quantitative trait loci (QTL) for birth weight (a trait positively associated with overall fitness) in an unmanipulated, wild population of red deer (Cervus elaphus). Two approaches were used: interval mapping by linear regression within half-sib families and a variance components analysis of a six-generation pedigree of >350 animals. Evidence for segregating QTL was found on three linkage groups, one of which was significant at the genome-wide suggestive linkage threshold. To our knowledge this is the first time that a QTL for any trait has been mapped in a wild mammal population. It is hoped that this study will stimulate further investigations of the genetic architecture of fitness traits in the wild.

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Year:  2002        PMID: 12524355      PMCID: PMC1462362     

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  38 in total

Review 1.  Genetic dissection of phenotypic diversity in farm animals.

Authors:  L Andersson
Journal:  Nat Rev Genet       Date:  2001-02       Impact factor: 53.242

Review 2.  Understanding quantitative genetic variation.

Authors:  N H Barton; P D Keightley
Journal:  Nat Rev Genet       Date:  2002-01       Impact factor: 53.242

3.  Sex-specific quantitative trait loci affecting longevity in Drosophila melanogaster.

Authors:  S V Nuzhdin; E G Pasyukova; C L Dilda; Z B Zeng; T F Mackay
Journal:  Proc Natl Acad Sci U S A       Date:  1997-09-02       Impact factor: 11.205

4.  Heritability of fitness in a wild mammal population.

Authors:  L E Kruuk; T H Clutton-Brock; J Slate; J M Pemberton; S Brotherstone; F E Guinness
Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-18       Impact factor: 11.205

Review 5.  Comparing mutational variabilities.

Authors:  D Houle; B Morikawa; M Lynch
Journal:  Genetics       Date:  1996-07       Impact factor: 4.562

6.  Quantitative genetics and fitness: lessons from Drosophila.

Authors:  D A Roff; T A Mousseau
Journal:  Heredity (Edinb)       Date:  1987-02       Impact factor: 3.821

7.  Naturally occurring variation in bristle number and DNA polymorphisms at the scabrous locus of Drosophila melanogaster.

Authors:  C Lai; R F Lyman; A D Long; C H Langley; T F Mackay
Journal:  Science       Date:  1994-12-09       Impact factor: 47.728

8.  An ordered comparative map of the cattle and human genomes.

Authors:  M R Band; J H Larson; M Rebeiz; C A Green; D W Heyen; J Donovan; R Windish; C Steining; P Mahyuddin; J E Womack; H A Lewin
Journal:  Genome Res       Date:  2000-09       Impact factor: 9.043

9.  The distribution of the effects of genes affecting quantitative traits in livestock.

Authors:  B Hayes; M E Goddard
Journal:  Genet Sel Evol       Date:  2001 May-Jun       Impact factor: 4.297

10.  Statistical confidence for likelihood-based paternity inference in natural populations.

Authors:  T C Marshall; J Slate; L E Kruuk; J M Pemberton
Journal:  Mol Ecol       Date:  1998-05       Impact factor: 6.185

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  30 in total

1.  Genetic linkage map of a wild genome: genomic structure, recombination and sexual dimorphism in bighorn sheep.

Authors:  Jocelyn Poissant; John T Hogg; Corey S Davis; Joshua M Miller; Jillian F Maddox; David W Coltman
Journal:  BMC Genomics       Date:  2010-09-28       Impact factor: 3.969

Review 2.  Estimating genetic parameters in natural populations using the "animal model".

Authors:  Loeske E B Kruuk
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-06-29       Impact factor: 6.237

3.  A strong quantitative trait locus for wing length on chromosome 2 in a wild population of great reed warblers.

Authors:  Maja Tarka; Mikael Akesson; Dario Beraldi; Jules Hernández-Sánchez; Dennis Hasselquist; Staffan Bensch; Bengt Hansson
Journal:  Proc Biol Sci       Date:  2010-03-24       Impact factor: 5.349

4.  Quantitative trait loci with age-specific effects on fecundity in Drosophila melanogaster.

Authors:  Jeff Leips; Paul Gilligan; Trudy F C Mackay
Journal:  Genetics       Date:  2005-11-04       Impact factor: 4.562

5.  Modeling linkage disequilibrium in natural populations: the example of the Soay sheep population of St. Kilda, Scotland.

Authors:  Allan F McRae; Josephine M Pemberton; Peter M Visscher
Journal:  Genetics       Date:  2005-06-18       Impact factor: 4.562

Review 6.  The estimation of genetic relationships using molecular markers and their efficiency in estimating heritability in natural populations.

Authors:  Stuart C Thomas
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2005-07-29       Impact factor: 6.237

7.  Robustness of linkage maps in natural populations: a simulation study.

Authors:  Jon Slate
Journal:  Proc Biol Sci       Date:  2008-03-22       Impact factor: 5.349

8.  Gene mapping in the wild with SNPs: guidelines and future directions.

Authors:  Jon Slate; Jake Gratten; Dario Beraldi; Jessica Stapley; Matt Hale; Josephine M Pemberton
Journal:  Genetica       Date:  2008-09-09       Impact factor: 1.082

9.  A gene-based genetic linkage map of the collared flycatcher (Ficedula albicollis) reveals extensive synteny and gene-order conservation during 100 million years of avian evolution.

Authors:  Niclas Backström; Nikoletta Karaiskou; Erica H Leder; Lars Gustafsson; Craig R Primmer; Anna Qvarnström; Hans Ellegren
Journal:  Genetics       Date:  2008-06-18       Impact factor: 4.562

10.  Distribution of temperature tolerance quantitative trait loci in Arctic charr (Salvelinus alpinus) and inferred homologies in rainbow trout (Oncorhynchus mykiss).

Authors:  Ildiko M L Somorjai; Roy G Danzmann; Moira M Ferguson
Journal:  Genetics       Date:  2003-11       Impact factor: 4.562

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