Literature DB >> 14668393

Distribution of temperature tolerance quantitative trait loci in Arctic charr (Salvelinus alpinus) and inferred homologies in rainbow trout (Oncorhynchus mykiss).

Ildiko M L Somorjai1, Roy G Danzmann, Moira M Ferguson.   

Abstract

We searched for quantitative trait loci (QTL) affecting upper temperature tolerance (UTT) in crosses between the Nauyuk Lake and Fraser River strains of Arctic charr (Salvelinus alpinus) using survival analysis. Two QTL were detected by using two microsatellite markers after correcting for experiment-wide error. A comparative mapping approach localized these two QTL to homologous linkage groups containing UTT QTL in rainbow trout (Oncorhynchus mykiss). Additional marginal associations were detected in several families in regions homologous to those with QTL in rainbow trout. Thus, the genes underlying UTT QTL may antedate the divergence of these two species, which occurred by approximately 16 MYA. The data also indicate that one pair of homeologs (ancestrally duplicated chromosomal segments) have contained QTL in Arctic charr since the evolution of salmonids from a tetraploid ancestor 25-100 MYA. This study represents one of the first examples of comparative QTL mapping in an animal polyploid group and illustrates the fate of QTL after genome duplication and reorganization.

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Year:  2003        PMID： 14668393      PMCID： PMC1462839     

Source DB:  PubMed          Journal:  Genetics        ISSN： 0016-6731            Impact factor:   4.562


  33 in total

Review 1.  Chromosome evolution in the Salmonidae (Pisces): an update.

Authors:  R Phillips; P Ráb
Journal:  Biol Rev Camb Philos Soc       Date:  2001-02

Review 2.  Vertebrate evolution: recent perspectives from fish.

Authors:  S Aparicio
Journal:  Trends Genet       Date:  2000-02       Impact factor: 11.639

3.  The identification and characterization of microsatellites in the compact genome of the Japanese pufferfish, Fugu rubripes: perspectives in functional and comparative genomic analyses.

Authors:  Y J Edwards; G Elgar; M S Clark; M J Bishop
Journal:  J Mol Biol       Date:  1998-05-15       Impact factor: 5.469

4.  Multiple flowering time QTLs within several Brassica species could be the result of duplicated copies of one ancestral gene.

Authors:  T Axeisson; O Shavorskaya; U Lagercrantz
Journal:  Genome       Date:  2001-10       Impact factor: 2.166

5.  Transcribed dinucleotide microsatellites and their associated genes from channel catfish Ictalurus punctatus.

Authors:  Z Liu; G Tan; P Li; R A Dunham
Journal:  Biochem Biophys Res Commun       Date:  1999-05-27       Impact factor: 3.575

6.  Phylogeny of salmonine fishes based on growth hormone introns: Atlantic (Salmo) and Pacific (Oncorhynchus) salmon are not sister taxa.

Authors:  T H Oakley; R B Phillips
Journal:  Mol Phylogenet Evol       Date:  1999-04       Impact factor: 4.286

7.  Quantitative trait loci for upper thermal tolerance in outbred strains of rainbow trout (Oncorhynchus mykiss).

Authors:  G M Perry; R G Danzmann; M M Ferguson; J P Gibson
Journal:  Heredity (Edinb)       Date:  2001-03       Impact factor: 3.821

8.  Molecular dissection of complex traits in autopolyploids: mapping QTLs affecting sugar yield and related traits in sugarcane.

Authors:  R. Ming; -W. Wang; X. Draye; H. Moore; E. Irvine; H. Paterson
Journal:  Theor Appl Genet       Date:  2002-05-18       Impact factor: 5.699

9.  A consolidated linkage map for rainbow trout (Oncorhynchus mykiss).

Authors:  K M Nichols; W P Young; R G Danzmann; B D Robison; C Rexroad; M Noakes; R B Phillips; P Bentzen; I Spies; K Knudsen; F W Allendorf; B M Cunningham; J Brunelli; H Zhang; S Ristow; R Drew; K H Brown; P A Wheeler; G H Thorgaard
Journal:  Anim Genet       Date:  2003-04       Impact factor: 3.169

10.  Large-scale variation among human and great ape genomes determined by array comparative genomic hybridization.

Authors:  Devin P Locke; Richard Segraves; Lucia Carbone; Nicoletta Archidiacono; Donna G Albertson; Daniel Pinkel; Evan E Eichler
Journal:  Genome Res       Date:  2003-03       Impact factor: 9.043
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  19 in total

1.  Mapping QTL for an adaptive trait: the length of caudal fin in Lates calcarifer.

Authors:  C M Wang; L C Lo; Z Y Zhu; H Y Pang; H M Liu; J Tan; H S Lim; R Chou; L Orban; G H Yue
Journal:  Mar Biotechnol (NY)       Date:  2010-03-30       Impact factor: 3.619

2.  Molecular markers for variation in spawning date in a hatchery population of rainbow trout (Oncorhynchus mykiss).

Authors:  M S Allen; M M Ferguson; R G Danzmann
Journal:  Mar Biotechnol (NY)       Date:  2013-10-11       Impact factor: 3.619

3.  Increased levels of mitochondrial gene transcripts in the thermally selected rainbow trout (Oncorhynchus mykiss) strain during embryonic development.

Authors:  Koki Ikeguchi; Toshinao Ineno; Shiro Itoi; Hidehiro Kondo; Shigeharu Kinoshita; Shugo Watabe
Journal:  Mar Biotechnol (NY)       Date:  2006-02-28       Impact factor: 3.619

4.  An assessment of the spatial scale of local adaptation in brown trout (Salmo trutta L.): footprints of selection at microsatellite DNA loci.

Authors:  K Meier; M M Hansen; D Bekkevold; Ø Skaala; K-L D Mensberg
Journal:  Heredity (Edinb)       Date:  2011-01-12       Impact factor: 3.821

5.  High-resolution genetic linkage mapping, high-temperature tolerance and growth-related quantitative trait locus (QTL) identification in Marsupenaeus japonicus.

Authors:  Xia Lu; Sheng Luan; Long Yang Hu; Yong Mao; Ye Tao; Sheng Ping Zhong; Jie Kong
Journal:  Mol Genet Genomics       Date:  2016-03-10       Impact factor: 3.291

6.  Linkage maps for the Pacific abalone (genus Haliotis) based on microsatellite DNA markers.

Authors:  Masashi Sekino; Motoyuki Hara
Journal:  Genetics       Date:  2006-12-06       Impact factor: 4.562

7.  Mapping of quantitative trait loci for flesh colour and growth traits in Atlantic salmon (Salmo salar).

Authors:  Matthew Baranski; Thomas Moen; Dag Inge Våge
Journal:  Genet Sel Evol       Date:  2010-06-04       Impact factor: 4.297

8.  Dynamic rearrangements determine genome organization and useful traits in soybean.

Authors:  Kyung Do Kim; Jin Hee Shin; Kyujung Van; Dong Hyun Kim; Suk-Ha Lee
Journal:  Plant Physiol       Date:  2009-08-14       Impact factor: 8.340

9.  Quantitative trait loci for body weight, condition factor and age at sexual maturation in Arctic charr (Salvelinus alpinus): comparative analysis with rainbow trout (Oncorhynchus mykiss) and Atlantic salmon (Salmo salar).

Authors:  Hooman K Moghadam; Jocelyn Poissant; Heather Fotherby; Lisa Haidle; Moira M Ferguson; Roy G Danzmann
Journal:  Mol Genet Genomics       Date:  2007-02-17       Impact factor: 2.980

10.  Comparative mapping reveals quantitative trait loci that affect spawning time in coho salmon (Oncorhynchus kisutch).

Authors:  Cristian Araneda; Nelson F Díaz; Gilda Gomez; María Eugenia López; Patricia Iturra
Journal:  Genet Mol Biol       Date:  2012-06-23       Impact factor: 1.771
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