Literature DB >> 10698646

Cross-correlated relaxation for the measurement of angles between tensorial interactions.

B Reif1, A Diener, M Hennig, M Maurer, C Griesinger.   

Abstract

Theory,experimental aspects, and use in structure calculation of cross-correlated relaxation rates measured on zero- and double-quantum coherences in liquid state NMR are presented. The relative size of the interaction depends on the projection angle between the two tensorial interactions. The tensorial interaction can be either a dipolar interaction or a chemical shift anisotropy relaxation mechanism (CSA). Effects of additional sources of relaxation on the cross-correlated relaxation rates are analyzed. Also, an easy-to-use formalism is given to manipulate different cross-correlated relaxation interactions. The application addresses measurement of the backbone angle psi in a protein by measuring dipole((15)N-(1)H)-dipole((13)C(alpha)-(1)H(alpha)) and CSA((15)N)-dipole((13)C(alpha)-(1)H(alpha)) cross-correlated relaxation rates. It is shown that ambiguities due to the 3 cos(2)θ-1 dependence of one cross-correlated relaxation rate can be overcome by measuring additional cross-correlated relaxation rates. The use of cross-correlated relaxation rates is demonstrated in structure calculations. Copyright 2000 Academic Press.

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Year:  2000        PMID: 10698646     DOI: 10.1006/jmre.1999.1980

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  17 in total

1.  Geometry dependent two-dimensional heteronuclear multiplet effects in paramagnetic proteins.

Authors:  P K Madhu; R Grandori; K Hohenthanner; P K Mandal; N Müller
Journal:  J Biomol NMR       Date:  2001-05       Impact factor: 2.835

2.  Intraresidue 1H-15N-13C' and 1H alpha-13C alpha-13C' dipole-CSA relaxation interference as a source of constraints for structural refinement of metal-binding sites in zinc-finger proteins.

Authors:  K Kloiber; W Schüler; R Konrat
Journal:  J Biomol NMR       Date:  2001-04       Impact factor: 2.835

3.  Similarities between intra- and intermolecular hydrogen bonds in RNA kissing complexes found by means of cross-correlated relaxation.

Authors:  Jens Dittmer; Chul-Hyun Kim; Geoffrey Bodenhausen
Journal:  J Biomol NMR       Date:  2003-07       Impact factor: 2.835

4.  Correlated motions of successive amide N-H bonds in proteins.

Authors:  Philippe Pelupessy; Sapna Ravindranathan; Geoffrey Bodenhausen
Journal:  J Biomol NMR       Date:  2003-04       Impact factor: 2.835

Review 5.  An overview of recent developments in the interpretation and prediction of fast internal protein dynamics.

Authors:  Gabrielle Nodet; Daniel Abergel
Journal:  Eur Biophys J       Date:  2007-06-12       Impact factor: 1.733

6.  Slow motions in chicken villin headpiece subdomain probed by cross-correlated NMR relaxation of amide NH bonds in successive residues.

Authors:  Liliya Vugmeyster; C James McKnight
Journal:  Biophys J       Date:  2008-09-26       Impact factor: 4.033

7.  How uniform is the peptide plane geometry? A high-accuracy NMR study of dipolar Cα-C'/H N-N cross-correlated relaxation.

Authors:  Beat Vögeli
Journal:  J Biomol NMR       Date:  2011-06-03       Impact factor: 2.835

8.  Correlated dynamics of consecutive residues reveal transient and cooperative unfolding of secondary structure in proteins.

Authors:  Patrik Lundström; Frans A A Mulder; Mikael Akke
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-08       Impact factor: 11.205

9.  Cross-correlated relaxation rates between protein backbone H-X dipolar interactions.

Authors:  Beat Vögeli
Journal:  J Biomol NMR       Date:  2017-03-12       Impact factor: 2.835

10.  Correlated dynamics between protein HN and HC bonds observed by NMR cross relaxation.

Authors:  Beat Vögeli; Lishan Yao
Journal:  J Am Chem Soc       Date:  2009-03-18       Impact factor: 15.419

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