Literature DB >> 30110510

Distance-independent Cross-correlated Relaxation and Isotropic Chemical Shift Modulation in Protein Dynamics Studies.

Beat Vögeli1, Liliya Vugmeyster2.   

Abstract

Cross-correlated relaxation (CCR) in multiple-quantum coherences differs from other relaxation phenomena in its theoretical ability to be mediated across an infinite distance. The two interfering relaxation mechanisms may be dipolar interactions, chemical shift anisotropies, chemical shift modulations or quadrupolar interactions. These properties make multiple-quantum CCR an attractive probe for structure and dynamics of biomacromolecules not accessible from other measurements. Here, we review the use of multiple-quantum CCR measurements in dynamics studies of proteins. We compile a list of all experiments proposed for CCR rate measurements, provide an overview of the theory with a focus on protein dynamics, and present applications to various protein systems.
© 2019 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  biomacromolecules; correlated motion; cross-correlated relaxation; multiple-quantum coherence; protein dynamics

Mesh:

Substances:

Year:  2018        PMID: 30110510      PMCID: PMC9206835          DOI: 10.1002/cphc.201800602

Source DB:  PubMed          Journal:  Chemphyschem        ISSN: 1439-4235            Impact factor:   3.520


  77 in total

1.  Cross-correlated chemical shift modulation: a signature of slow internal motions in proteins.

Authors:  D Früh; J R Tolman; G Bodenhausen; C Zwahlen
Journal:  J Am Chem Soc       Date:  2001-05-23       Impact factor: 15.419

Review 2.  Cross-correlated relaxation for measurement of angles between tensorial interactions.

Authors:  H Schwalbe; T Carlomagno; M Hennig; J Junker; B Reif; C Richter; C Griesinger
Journal:  Methods Enzymol       Date:  2001       Impact factor: 1.600

3.  Correlated motions of successive amide N-H bonds in proteins.

Authors:  Philippe Pelupessy; Sapna Ravindranathan; Geoffrey Bodenhausen
Journal:  J Biomol NMR       Date:  2003-04       Impact factor: 2.835

4.  Probabilistic Determination of Native State Ensembles of Proteins.

Authors:  Simon Olsson; Beat Rolf Vögeli; Andrea Cavalli; Wouter Boomsma; Jesper Ferkinghoff-Borg; Kresten Lindorff-Larsen; Thomas Hamelryck
Journal:  J Chem Theory Comput       Date:  2014-06-30       Impact factor: 6.006

5.  Slow backbone dynamics of chicken villin headpiece subdomain probed by NMR C'-N cross-correlated relaxation.

Authors:  Liliya Vugmeyster
Journal:  Magn Reson Chem       Date:  2009-09       Impact factor: 2.447

6.  Slow motions in chicken villin headpiece subdomain probed by cross-correlated NMR relaxation of amide NH bonds in successive residues.

Authors:  Liliya Vugmeyster; C James McKnight
Journal:  Biophys J       Date:  2008-09-26       Impact factor: 4.033

7.  Electron spin-nuclear spin cross-correlation effects on multiplet splittings in paramagnetic proteins.

Authors:  R Ghose; J H Prestegard
Journal:  J Magn Reson       Date:  1997-10       Impact factor: 2.229

8.  Detection of Correlated Protein Backbone and Side-Chain Angle Fluctuations.

Authors:  R Bryn Fenwick; Beat Vögeli
Journal:  Chembiochem       Date:  2017-08-25       Impact factor: 3.164

9.  Determination of aliphatic side-chain conformation using cross-correlated relaxation: application to an extraordinarily stable 2'-aminoethoxy-modified oligonucleotide triplex.

Authors:  T Carlomagno; M J Blommers; J Meiler; B Cuenoud; C Griesinger
Journal:  J Am Chem Soc       Date:  2001-08-01       Impact factor: 15.419

10.  Probing slow backbone dynamics in proteins using TROSY-based experiments to detect cross-correlated time-modulation of isotropic chemical shifts.

Authors:  Ananya Majumdar; Ranajeet Ghose
Journal:  J Biomol NMR       Date:  2004-03       Impact factor: 2.835

View more
  5 in total

1.  Deuteration of nonexchangeable protons on proteins affects their thermal stability, side-chain dynamics, and hydrophobicity.

Authors:  Parker J Nichols; Isaac Falconer; Aaron Griffin; Colin Mant; Robert Hodges; Christopher J McKnight; Beat Vögeli; Liliya Vugmeyster
Journal:  Protein Sci       Date:  2020-05-26       Impact factor: 6.725

Review 2.  Relaxing with liquids and solids - A perspective on biomolecular dynamics.

Authors:  Paul Schanda
Journal:  J Magn Reson       Date:  2019-07-11       Impact factor: 2.229

3.  Atomic resolution protein allostery from the multi-state structure of a PDZ domain.

Authors:  Dzmitry Ashkinadze; Harindranath Kadavath; Aditya Pokharna; Celestine N Chi; Michael Friedmann; Dean Strotz; Pratibha Kumari; Martina Minges; Riccardo Cadalbert; Stefan Königl; Peter Güntert; Beat Vögeli; Roland Riek
Journal:  Nat Commun       Date:  2022-10-20       Impact factor: 17.694

4.  A novel high-dimensional NMR experiment for resolving protein backbone dihedral angle ambiguities.

Authors:  Clemens Kauffmann; Krzysztof Kazimierczuk; Thomas C Schwarz; Robert Konrat; Anna Zawadzka-Kazimierczuk
Journal:  J Biomol NMR       Date:  2020-04-01       Impact factor: 2.835

5.  Using Cross-Correlated Spin Relaxation to Characterize Backbone Dihedral Angle Distributions of Flexible Protein Segments.

Authors:  Clemens Kauffmann; Anna Zawadzka-Kazimierczuk; Georg Kontaxis; Robert Konrat
Journal:  Chemphyschem       Date:  2020-12-10       Impact factor: 3.102

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.