Literature DB >> 12520038

REBASE: restriction enzymes and methyltransferases.

Richard J Roberts1, Tamas Vincze, Janos Posfai, Dana Macelis.   

Abstract

REBASE contains comprehensive information about restriction enzymes, DNA methyltransferases and related proteins such as nicking enzymes, specificity subunits and control proteins. It contains published and unpublished references, recognition and cleavage sites, isoschizomers, commercial availability, crystal and sequence data. Homing endonucleases are also included. REBASE contains the most complete and up-to-date information about the methylation sensitivity of restriction endonucleases. In addition, there is extensive information about the known and putative restriction-modification (R-M) systems in more than 100 sequenced bacterial and archaeal genomes. The data is available on the web (http://rebase.neb.com/rebase/rebase.html), through ftp (ftp.neb.com) and as monthly updates via email.

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Year:  2003        PMID: 12520038      PMCID: PMC165516          DOI: 10.1093/nar/gkg069

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  6 in total

1.  REBASE--restriction enzymes and methylases.

Authors:  R J Roberts; D Macelis
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  Predictive motifs derived from cytosine methyltransferases.

Authors:  J Pósfai; A S Bhagwat; G Pósfai; R J Roberts
Journal:  Nucleic Acids Res       Date:  1989-04-11       Impact factor: 16.971

3.  Sequence motifs characteristic of DNA[cytosine-N4]methyltransferases: similarity to adenine and cytosine-C5 DNA-methylases.

Authors:  S Klimasauskas; A Timinskas; S Menkevicius; D Butkienè; V Butkus; A Janulaitis
Journal:  Nucleic Acids Res       Date:  1989-12-11       Impact factor: 16.971

4.  Letter: A suggested nomenclature for bacterial host modification and restriction systems and their enzymes.

Authors:  H O Smith; D Nathans
Journal:  J Mol Biol       Date:  1973-12-15       Impact factor: 5.469

5.  Effect of site-specific methylation on restriction endonucleases and DNA modification methyltransferases.

Authors:  M Nelson; E Raschke; M McClelland
Journal:  Nucleic Acids Res       Date:  1993-07-01       Impact factor: 16.971

6.  Effect of site-specific modification on restriction endonucleases and DNA modification methyltransferases.

Authors:  M McClelland; M Nelson; E Raschke
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971

  6 in total
  50 in total

1.  A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes.

Authors:  Richard J Roberts; Marlene Belfort; Timothy Bestor; Ashok S Bhagwat; Thomas A Bickle; Jurate Bitinaite; Robert M Blumenthal; Sergey Kh Degtyarev; David T F Dryden; Kevin Dybvig; Keith Firman; Elizaveta S Gromova; Richard I Gumport; Stephen E Halford; Stanley Hattman; Joseph Heitman; David P Hornby; Arvydas Janulaitis; Albert Jeltsch; Jytte Josephsen; Antal Kiss; Todd R Klaenhammer; Ichizo Kobayashi; Huimin Kong; Detlev H Krüger; Sanford Lacks; Martin G Marinus; Michiko Miyahara; Richard D Morgan; Noreen E Murray; Valakunja Nagaraja; Andrzej Piekarowicz; Alfred Pingoud; Elisabeth Raleigh; Desirazu N Rao; Norbert Reich; Vladimir E Repin; Eric U Selker; Pang-Chui Shaw; Daniel C Stein; Barry L Stoddard; Waclaw Szybalski; Thomas A Trautner; James L Van Etten; Jorge M B Vitor; Geoffrey G Wilson; Shuang-yong Xu
Journal:  Nucleic Acids Res       Date:  2003-04-01       Impact factor: 16.971

2.  Selective DNA amplification from complex genomes using universal double-sided adapters.

Authors:  Matthew J Callow; Snezana Drmanac; Radoje Drmanac
Journal:  Nucleic Acids Res       Date:  2004-01-28       Impact factor: 16.971

3.  Sources and predictors of resolvable indel polymorphism assessed using rice as a model.

Authors:  J D Edwards; V M Lee; S R McCouch
Journal:  Mol Genet Genomics       Date:  2004-01-31       Impact factor: 3.291

4.  The methyltransferase from the LlaDII restriction-modification system influences the level of expression of its own gene.

Authors:  Lisa Lystbaek Christensen; Jytte Josephsen
Journal:  J Bacteriol       Date:  2004-01       Impact factor: 3.490

5.  NEBcutter: A program to cleave DNA with restriction enzymes.

Authors:  Tamas Vincze; Janos Posfai; Richard J Roberts
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

6.  A new Thermus sp. class-IIS enzyme sub-family: isolation of a 'twin' endonuclease TspDTI with a novel specificity 5'-ATGAA(N(11/9))-3', related to TspGWI, TaqII and Tth111II.

Authors:  Piotr M Skowron; Jarosław Majewski; Agnieszka Zylicz-Stachula; Sylwia M Rutkowska; Izabela Jaworowska; Renata I Harasimowicz-Słowińska
Journal:  Nucleic Acids Res       Date:  2003-07-15       Impact factor: 16.971

7.  DNA supercoiling enables the type IIS restriction enzyme BspMI to recognise the relative orientation of two DNA sequences.

Authors:  Isabel J Kingston; Niall A Gormley; Stephen E Halford
Journal:  Nucleic Acids Res       Date:  2003-09-15       Impact factor: 16.971

8.  The recognition and modification sites for the bacterial type I restriction systems KpnAI, StySEAI, StySENI and StySGI.

Authors:  Julie K A Kasarjian; Masumi Hidaka; Takashi Horiuchi; Masatake Iida; Junichi Ryu
Journal:  Nucleic Acids Res       Date:  2004-06-15       Impact factor: 16.971

9.  PlasMapper: a web server for drawing and auto-annotating plasmid maps.

Authors:  Xiaoli Dong; Paul Stothard; Ian J Forsythe; David S Wishart
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

10.  Cloning of CviPII nicking and modification system from chlorella virus NYs-1 and application of Nt.CviPII in random DNA amplification.

Authors:  Siu-hong Chan; Zhenyu Zhu; James L Van Etten; Shuang-yong Xu
Journal:  Nucleic Acids Res       Date:  2004-11-29       Impact factor: 16.971

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