Literature DB >> 12654995

A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes.

Richard J Roberts1, Marlene Belfort, Timothy Bestor, Ashok S Bhagwat, Thomas A Bickle, Jurate Bitinaite, Robert M Blumenthal, Sergey Kh Degtyarev, David T F Dryden, Kevin Dybvig, Keith Firman, Elizaveta S Gromova, Richard I Gumport, Stephen E Halford, Stanley Hattman, Joseph Heitman, David P Hornby, Arvydas Janulaitis, Albert Jeltsch, Jytte Josephsen, Antal Kiss, Todd R Klaenhammer, Ichizo Kobayashi, Huimin Kong, Detlev H Krüger, Sanford Lacks, Martin G Marinus, Michiko Miyahara, Richard D Morgan, Noreen E Murray, Valakunja Nagaraja, Andrzej Piekarowicz, Alfred Pingoud, Elisabeth Raleigh, Desirazu N Rao, Norbert Reich, Vladimir E Repin, Eric U Selker, Pang-Chui Shaw, Daniel C Stein, Barry L Stoddard, Waclaw Szybalski, Thomas A Trautner, James L Van Etten, Jorge M B Vitor, Geoffrey G Wilson, Shuang-yong Xu.   

Abstract

A nomenclature is described for restriction endonucleases, DNA methyltransferases, homing endonucleases and related genes and gene products. It provides explicit categories for the many different Type II enzymes now identified and provides a system for naming the putative genes found by sequence analysis of microbial genomes.

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Year:  2003        PMID： 12654995      PMCID： PMC152790          DOI： 10.1093/nar/gkg274

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  34 in total

Review 1.  Class-IIS restriction enzymes--a review.

Authors:  W Szybalski; S C Kim; N Hasan; A J Podhajska
Journal:  Gene       Date:  1991-04       Impact factor: 3.688

2.  Agmenellum quadruplicatum M.AquI, a novel modification methylase.

Authors:  C Karreman; A de Waard
Journal:  J Bacteriol       Date:  1990-01       Impact factor: 3.490

3.  Stepwise cloning and molecular characterization of the HgiDI restriction-modification system from Herpetosiphon giganteus Hpa2.

Authors:  A Düsterhöft; D Erdmann; M Kröger
Journal:  Nucleic Acids Res       Date:  1991-03-11       Impact factor: 16.971

4.  Nucleotide sequence of the FokI restriction-modification system: separate strand-specificity domains in the methyltransferase.

Authors:  M C Looney; L S Moran; W E Jack; G R Feehery; J S Benner; B E Slatko; G G Wilson
Journal:  Gene       Date:  1989-08-15       Impact factor: 3.688

5.  A family of regulatory genes associated with type II restriction-modification systems.

Authors:  T Tao; J C Bourne; R M Blumenthal
Journal:  J Bacteriol       Date:  1991-02       Impact factor: 3.490

6.  Nomenclature for bacterial genes coding for class-II restriction endonucleases and modification methyltransferases.

Authors:  W Szybalski; R M Blumenthal; J E Brooks; S Hattman; E A Raleigh
Journal:  Gene       Date:  1988-12-25       Impact factor: 3.688

7.  DNA methylases of Hemophilus influenzae Rd. II. Partial recognition site base sequences.

Authors:  P H Roy; H O Smith
Journal:  J Mol Biol       Date:  1973-12-25       Impact factor: 5.469

Review 8.  Structure and mechanism of multifunctional restriction endonucleases.

Authors:  R Yuan
Journal:  Annu Rev Biochem       Date:  1981       Impact factor: 23.643

9.  Escherichia coli K-12 restricts DNA containing 5-methylcytosine.

Authors:  E A Raleigh; G Wilson
Journal:  Proc Natl Acad Sci U S A       Date:  1986-12       Impact factor: 11.205

10.  The vsr gene product of E. coli K-12 is a strand- and sequence-specific DNA mismatch endonuclease.

Authors:  F Hennecke; H Kolmar; K Bründl; H J Fritz
Journal:  Nature       Date:  1991-10-24       Impact factor: 49.962
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  317 in total

1.  Diversity of type II restriction endonucleases that require two DNA recognition sites.

Authors:  Merlind Mucke; Detlev H Kruger; Monika Reuter
Journal:  Nucleic Acids Res       Date:  2003-11-01       Impact factor: 16.971

2.  Pseudocomplementary PNAs as selective modifiers of protein activity on duplex DNA: the case of type IIs restriction enzymes.

Authors:  Ekaterina Protozanova; Vadim V Demidov; Peter E Nielsen; Maxim D Frank-Kamenetskii
Journal:  Nucleic Acids Res       Date:  2003-07-15       Impact factor: 16.971

3.  The isolation of strand-specific nicking endonucleases from a randomized SapI expression library.

Authors:  James C Samuelson; Zhenyu Zhu; Shuang-yong Xu
Journal:  Nucleic Acids Res       Date:  2004-07-09       Impact factor: 16.971

4.  GATC-specific restriction--modification systems in ruminal bacteria.

Authors:  M Piknová; P Pristas; P Javorský
Journal:  Folia Microbiol (Praha)       Date:  2004       Impact factor: 2.099

5.  One recognition sequence, seven restriction enzymes, five reaction mechanisms.

Authors:  Darren M Gowers; Stuart R W Bellamy; Stephen E Halford
Journal:  Nucleic Acids Res       Date:  2004-06-29       Impact factor: 16.971

6.  Genomic representations using concatenates of Type IIB restriction endonuclease digestion fragments.

Authors:  Torstein Tengs; Thomas LaFramboise; Robert B Den; David N Hayes; Jianhua Zhang; Saikat DebRoy; Robert C Gentleman; Keith O'Neill; Bruce Birren; Matthew Meyerson
Journal:  Nucleic Acids Res       Date:  2004-08-25       Impact factor: 16.971

7.  Lactococcal plasmid pNP40 encodes a novel, temperature-sensitive restriction-modification system.

Authors:  Jonathan O'Driscoll; Frances Glynn; Oonagh Cahalane; Mary O'Connell-Motherway; Gerald F Fitzgerald; Douwe Van Sinderen
Journal:  Appl Environ Microbiol       Date:  2004-09       Impact factor: 4.792

8.  A group II intron encodes a functional LAGLIDADG homing endonuclease and self-splices under moderate temperature and ionic conditions.

Authors:  Sahra-Taylor Mullineux; Maria Costa; Gurminder S Bassi; François Michel; Georg Hausner
Journal:  RNA       Date:  2010-07-23       Impact factor: 4.942

9.  Crystallization and X-ray diffraction studies of DNA-free and DNA-bound forms of EcoO109I DNA methyltransferase.

Authors:  Makoto Iwamoto; Asami Hishiki; Takashi Shimada; Tsuyoshi Imasaki; Junko Tsuda; Keiko Kita; Toshiyuki Shimizu; Mamoru Sato; Hiroshi Hashimoto
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-10-29

10.  Birth and death of genes linked to chromosomal inversion.

Authors:  Yoshikazu Furuta; Mikihiko Kawai; Koji Yahara; Noriko Takahashi; Naofumi Handa; Takeshi Tsuru; Kenshiro Oshima; Masaru Yoshida; Takeshi Azuma; Masahira Hattori; Ikuo Uchiyama; Ichizo Kobayashi
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-06       Impact factor: 11.205
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