Literature DB >> 11125108

REBASE--restriction enzymes and methylases.

R J Roberts1, D Macelis.   

Abstract

REBASE contains comprehensive information about restriction enzymes, DNA methylases and related proteins such as nicking enzymes, specificity subunits and control proteins. It contains published and unpublished references, recognition and cleavage sites, isoschizomers, commercial availability, methylation sensitivity, crystal data and sequence data. Homing endonucleases are also included. Most recently, extensive information about the methylation sensitivity of restriction enzymes has been added and a new feature contains complete analyses of the putative restriction systems in the sequenced bacterial and archaeal genomes. The data is distributed via email, ftp (ftp.neb.com) and the Web (http://rebase. neb.com).

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Substances:

Year:  2001        PMID: 11125108      PMCID: PMC29853          DOI: 10.1093/nar/29.1.268

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  3 in total

1.  REBASE - restriction enzymes and methylases.

Authors:  R J Roberts; D Macelis
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Letter: A suggested nomenclature for bacterial host modification and restriction systems and their enzymes.

Authors:  H O Smith; D Nathans
Journal:  J Mol Biol       Date:  1973-12-15       Impact factor: 5.469

3.  Effect of site-specific methylation on restriction endonucleases and DNA modification methyltransferases.

Authors:  M Nelson; E Raschke; M McClelland
Journal:  Nucleic Acids Res       Date:  1993-07-01       Impact factor: 16.971

  3 in total
  41 in total

1.  SfiI endonuclease activity is strongly influenced by the non-specific sequence in the middle of its recognition site.

Authors:  S A Williams; S E Halford
Journal:  Nucleic Acids Res       Date:  2001-04-01       Impact factor: 16.971

2.  Engineering a nicking endonuclease N.AlwI by domain swapping.

Authors:  Y Xu; K D Lunnen; H Kong
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-30       Impact factor: 11.205

3.  A unique type II restriction endonuclease FspAI, that recognizes the octanucleotide sequence 5'-RTGC/GCAY-3'.

Authors:  A Kesminiene; Z Maneliene; J Vitkute; M Petrusyte; A Janulaitis
Journal:  Nucleic Acids Res       Date:  2001-12-15       Impact factor: 16.971

4.  Role of DNA minor groove interactions in substrate recognition by the M.SinI and M.EcoRII DNA (cytosine-5) methyltransferases.

Authors:  A Kiss; G Pósfai; G Zsurka; T Raskó; P Venetianer
Journal:  Nucleic Acids Res       Date:  2001-08-01       Impact factor: 16.971

5.  Circular permutation of DNA cytosine-N4 methyltransferases: in vivo coexistence in the BcnI system and in vitro probing by hybrid formation.

Authors:  Giedrius Vilkaitis; Arvydas Lubys; Egle Merkiene; Albertas Timinskas; Arvydas Janulaitis; Saulius Klimasauskas
Journal:  Nucleic Acids Res       Date:  2002-04-01       Impact factor: 16.971

6.  TspGWI, a thermophilic class-IIS restriction endonuclease from Thermus sp., recognizes novel asymmetric sequence 5'-ACGGA(N11/9)-3'.

Authors:  Agnieszka Zylicz-Stachula; Renata I Harasimowicz-Slowińska; Ireneusz Sobolewski; Piotr M Skowron
Journal:  Nucleic Acids Res       Date:  2002-04-01       Impact factor: 16.971

7.  Distribution of the SsuDAT1I restriction-modification system among different serotypes of Streptococcus suis.

Authors:  T Sekizaki; M Osaki; D Takamatsu; Y Shimoji
Journal:  J Bacteriol       Date:  2001-09       Impact factor: 3.490

8.  AarI, a restriction endonuclease from Arthrobacter aurescens SS2-322, which recognizes the novel non-palindromic sequence 5'-CACCTGC(N)4/8-3'.

Authors:  R Grigaite; Z Maneliene; A Janulaitis
Journal:  Nucleic Acids Res       Date:  2002-11-01       Impact factor: 16.971

9.  Remodeling of DNA methylation and phenotypic and transcriptional changes in synthetic Arabidopsis allotetraploids.

Authors:  Andreas Madlung; Ricardo W Masuelli; Brian Watson; Steve H Reynolds; Jerry Davison; Luca Comai
Journal:  Plant Physiol       Date:  2002-06       Impact factor: 8.340

10.  Evidence for horizontal transfer of the EcoT38I restriction-modification gene to chromosomal DNA by the P2 phage and diversity of defective P2 prophages in Escherichia coli TH38 strains.

Authors:  Keiko Kita; Hideaki Kawakami; Hiroaki Tanaka
Journal:  J Bacteriol       Date:  2003-04       Impact factor: 3.490

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