Literature DB >> 12513215

Single-particle and collective dynamics of protein hydration water: a molecular dynamics study.

M Tarek1, D J Tobias.   

Abstract

We present an analysis based on molecular dynamics simulations of water single particle and collective density fluctuations in a protein crystal at 150 and 300 K. For the collective dynamics, the calculations predict the existence of two sound modes. The first one around 35 meV is highly dispersive and the second one around 9 meV is weakly dispersive in the k range studied here (0.5<k<4.2 A(-1)). We provide evidence that the boson peak around 4 meV in the single particle spectra arises from translational motion, is present in the coherent spectra, and is distinct from the two sound modes.

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Year:  2002        PMID: 12513215     DOI: 10.1103/PhysRevLett.89.275501

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  11 in total

1.  Characterization of the temperature- and pressure-induced inverse and reentrant transition of the minimum elastin-like polypeptide GVG(VPGVG) by DSC, PPC, CD, and FT-IR spectroscopy.

Authors:  C Nicolini; R Ravindra; B Ludolph; R Winter
Journal:  Biophys J       Date:  2004-03       Impact factor: 4.033

2.  Functional domain motions in proteins on the ~1-100 ns timescale: comparison of neutron spin-echo spectroscopy of phosphoglycerate kinase with molecular-dynamics simulation.

Authors:  N Smolin; R Biehl; G R Kneller; D Richter; J C Smith
Journal:  Biophys J       Date:  2012-03-06       Impact factor: 4.033

3.  Dissecting the THz spectrum of liquid water from first principles via correlations in time and space.

Authors:  Matthias Heyden; Jian Sun; Stefan Funkner; Gerald Mathias; Harald Forbert; Martina Havenith; Dominik Marx
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-21       Impact factor: 11.205

4.  The dynamical transition of proteins, concepts and misconceptions.

Authors:  Wolfgang Doster
Journal:  Eur Biophys J       Date:  2008-02-13       Impact factor: 1.733

5.  Structural Relaxation Processes and Collective Dynamics of Water in Biomolecular Environments.

Authors:  Sara Capponi; Stephen H White; Douglas J Tobias; Matthias Heyden
Journal:  J Phys Chem B       Date:  2019-01-02       Impact factor: 2.991

6.  Pressure effects on collective density fluctuations in water and protein solutions.

Authors:  Daniela Russo; Alessio Laloni; Alessandra Filabozzi; Matthias Heyden
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-09       Impact factor: 11.205

7.  Temperature-dependent conformational transitions and hydrogen-bond dynamics of the elastin-like octapeptide GVG(VPGVG): a molecular-dynamics study.

Authors:  Roger Rousseau; Eduard Schreiner; Axel Kohlmeyer; Dominik Marx
Journal:  Biophys J       Date:  2004-03       Impact factor: 4.033

Review 8.  Water Dynamics in the Hydration Shells of Biomolecules.

Authors:  Damien Laage; Thomas Elsaesser; James T Hynes
Journal:  Chem Rev       Date:  2017-03-01       Impact factor: 60.622

9.  The glassy state of crambin and the THz time scale protein-solvent fluctuations possibly related to protein function.

Authors:  Kristina N Woods
Journal:  BMC Biophys       Date:  2014-08-16       Impact factor: 4.778

10.  Translational diffusion of hydration water correlates with functional motions in folded and intrinsically disordered proteins.

Authors:  Giorgio Schirò; Yann Fichou; Francois-Xavier Gallat; Kathleen Wood; Frank Gabel; Martine Moulin; Michael Härtlein; Matthias Heyden; Jacques-Philippe Colletier; Andrea Orecchini; Alessandro Paciaroni; Joachim Wuttke; Douglas J Tobias; Martin Weik
Journal:  Nat Commun       Date:  2015-03-16       Impact factor: 14.919

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