Literature DB >> 12496083

Toward the physical basis of thermophilic proteins: linking of enriched polar interactions and reduced heat capacity of unfolding.

Huan-Xiang Zhou1.   

Abstract

The enrichment of salt bridges and hydrogen bonding in thermophilic proteins has long been recognized. Another tendency, featuring lower heat capacity of unfolding (DeltaC(p)) than found in mesophilic proteins, is emerging from the recent literature. Here we present a simple electrostatic model to illustrate that formation of a salt-bridge or hydrogen-bonding network around an ionized group in the folded state leads to increased folding stability and decreased DeltaC(p). We thus suggest that the reduced DeltaC(p) of thermophilic proteins could partly be attributed to enriched polar interactions. A reduced DeltaC(p) might serve as an indicator for the contribution of polar interactions to folding stability.

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Year:  2002        PMID: 12496083      PMCID: PMC1302391          DOI: 10.1016/S0006-3495(02)75316-2

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  42 in total

1.  Two exposed amino acid residues confer thermostability on a cold shock protein.

Authors:  D Perl; U Mueller; U Heinemann; F X Schmid
Journal:  Nat Struct Biol       Date:  2000-05

2.  Contributions of folding cores to the thermostabilities of two ribonucleases H.

Authors:  Srebrenka Robic; James M Berger; Susan Marqusee
Journal:  Protein Sci       Date:  2002-02       Impact factor: 6.725

3.  The stability of salt bridges at high temperatures: implications for hyperthermophilic proteins.

Authors:  A H Elcock
Journal:  J Mol Biol       Date:  1998-11-27       Impact factor: 5.469

4.  Heat capacity of proteins. II. Partial molar heat capacity of the unfolded polypeptide chain of proteins: protein unfolding effects.

Authors:  P L Privalov; G I Makhatadze
Journal:  J Mol Biol       Date:  1990-05-20       Impact factor: 5.469

5.  Thermal unfolding of the DNA-binding protein Sso7d from the hyperthermophile Sulfolobus solfataricus.

Authors:  S Knapp; A Karshikoff; K D Berndt; P Christova; B Atanasov; R Ladenstein
Journal:  J Mol Biol       Date:  1996-12-20       Impact factor: 5.469

6.  Divalent metal cofactor binding in the kinetic folding trajectory of Escherichia coli ribonuclease HI.

Authors:  E R Goedken; J L Keck; J M Berger; S Marqusee
Journal:  Protein Sci       Date:  2000-10       Impact factor: 6.725

7.  High stability of a ferredoxin from the hyperthermophilic archaeon A. ambivalens: involvement of electrostatic interactions and cofactors.

Authors:  C Moczygemba; J Guidry; K L Jones; C M Gomes; M Teixeira; P Wittung-Stafshede
Journal:  Protein Sci       Date:  2001-08       Impact factor: 6.725

8.  Thermodynamics of the unfolding of the cold-shock protein from Thermotoga maritima.

Authors:  D Wassenberg; C Welker; R Jaenicke
Journal:  J Mol Biol       Date:  1999-05-28       Impact factor: 5.469

9.  Hydration heat capacity of nucleic acid constituents determined from the random network model.

Authors:  B Madan; K A Sharp
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

10.  Universal nucleic acid-binding domain revealed by crystal structure of the B. subtilis major cold-shock protein.

Authors:  H Schindelin; M A Marahiel; U Heinemann
Journal:  Nature       Date:  1993-07-08       Impact factor: 49.962

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  18 in total

1.  Electrostatic contributions to the stability of a thermophilic cold shock protein.

Authors:  Huan-Xiang Zhou; Feng Dong
Journal:  Biophys J       Date:  2003-04       Impact factor: 4.033

2.  Comparison of calculation and experiment implicates significant electrostatic contributions to the binding stability of barnase and barstar.

Authors:  Feng Dong; M Vijayakumar; Huan-Xiang Zhou
Journal:  Biophys J       Date:  2003-07       Impact factor: 4.033

3.  Entropy-driven folding of an RNA helical junction: an isothermal titration calorimetric analysis of the hammerhead ribozyme.

Authors:  Peter J Mikulecky; Jennifer C Takach; Andrew L Feig
Journal:  Biochemistry       Date:  2004-05-18       Impact factor: 3.162

4.  Increasing protein stability: importance of DeltaC(p) and the denatured state.

Authors:  Hailong Fu; Gerald Grimsley; J Martin Scholtz; C Nick Pace
Journal:  Protein Sci       Date:  2010-05       Impact factor: 6.725

5.  Explanation of the stability of thermophilic proteins based on unique micromorphology.

Authors:  Simone Melchionna; Raffaele Sinibaldi; Giuseppe Briganti
Journal:  Biophys J       Date:  2006-03-13       Impact factor: 4.033

6.  Temperature dependence of the flexibility of thermophilic and mesophilic flavoenzymes of the nitroreductase fold.

Authors:  Eric D Merkley; William W Parson; Valerie Daggett
Journal:  Protein Eng Des Sel       Date:  2010-01-18       Impact factor: 1.650

7.  Computing protein stabilities from their chain lengths.

Authors:  Kingshuk Ghosh; Ken A Dill
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-17       Impact factor: 11.205

8.  How do thermophilic proteins and proteomes withstand high temperature?

Authors:  Lucas Sawle; Kingshuk Ghosh
Journal:  Biophys J       Date:  2011-07-06       Impact factor: 4.033

9.  Electrostatic effects on the folding stability of FKBP12.

Authors:  Jyotica Batra; Harianto Tjong; Huan-Xiang Zhou
Journal:  Protein Eng Des Sel       Date:  2016-07-05       Impact factor: 1.650

Review 10.  Electrostatic Interactions in Protein Structure, Folding, Binding, and Condensation.

Authors:  Huan-Xiang Zhou; Xiaodong Pang
Journal:  Chem Rev       Date:  2018-01-10       Impact factor: 60.622

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