Literature DB >> 29319301

Electrostatic Interactions in Protein Structure, Folding, Binding, and Condensation.

Huan-Xiang Zhou1,2, Xiaodong Pang2.   

Abstract

Charged and polar groups, through forming ion pairs, hydrogen bonds, and other less specific electrostatic interactions, impart important properties to proteins. Modulation of the charges on the amino acids, e.g., by pH and by phosphorylation and dephosphorylation, have significant effects such as protein denaturation and switch-like response of signal transduction networks. This review aims to present a unifying theme among the various effects of protein charges and polar groups. Simple models will be used to illustrate basic ideas about electrostatic interactions in proteins, and these ideas in turn will be used to elucidate the roles of electrostatic interactions in protein structure, folding, binding, condensation, and related biological functions. In particular, we will examine how charged side chains are spatially distributed in various types of proteins and how electrostatic interactions affect thermodynamic and kinetic properties of proteins. Our hope is to capture both important historical developments and recent experimental and theoretical advances in quantifying electrostatic contributions of proteins.

Entities:  

Mesh:

Substances:

Year:  2018        PMID: 29319301      PMCID: PMC5831536          DOI: 10.1021/acs.chemrev.7b00305

Source DB:  PubMed          Journal:  Chem Rev        ISSN: 0009-2665            Impact factor:   60.622


  534 in total

1.  Thermal stability and atomic-resolution crystal structure of the Bacillus caldolyticus cold shock protein.

Authors:  U Mueller; D Perl; F X Schmid; U Heinemann
Journal:  J Mol Biol       Date:  2000-04-07       Impact factor: 5.469

2.  Salt bridge stability in monomeric proteins.

Authors:  S Kumar; R Nussinov
Journal:  J Mol Biol       Date:  1999-11-12       Impact factor: 5.469

3.  A simple definition of structural regions in proteins and its use in analyzing interface evolution.

Authors:  Emmanuel D Levy
Journal:  J Mol Biol       Date:  2010-09-22       Impact factor: 5.469

4.  The dielectric constant of a folded protein.

Authors:  M K Gilson; B H Honig
Journal:  Biopolymers       Date:  1986-11       Impact factor: 2.505

5.  Role of the chain termini for the folding transition state of the cold shock protein.

Authors:  D Perl; G Holtermann; F X Schmid
Journal:  Biochemistry       Date:  2001-12-25       Impact factor: 3.162

Review 6.  Role of electrostatic repulsion in controlling pH-dependent conformational changes of viral fusion proteins.

Authors:  Joseph S Harrison; Chelsea D Higgins; Matthew J O'Meara; Jayne F Koellhoffer; Brian A Kuhlman; Jonathan R Lai
Journal:  Structure       Date:  2013-07-02       Impact factor: 5.006

7.  Charges in the hydrophobic interior of proteins.

Authors:  Daniel G Isom; Carlos A Castañeda; Brian R Cannon; Priya D Velu; Bertrand García-Moreno E
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-26       Impact factor: 11.205

8.  The Polarizable Atomic Multipole-based AMOEBA Force Field for Proteins.

Authors:  Yue Shi; Zhen Xia; Jiajing Zhang; Robert Best; Chuanjie Wu; Jay W Ponder; Pengyu Ren
Journal:  J Chem Theory Comput       Date:  2013       Impact factor: 6.006

9.  DBD-Hunter: a knowledge-based method for the prediction of DNA-protein interactions.

Authors:  Mu Gao; Jeffrey Skolnick
Journal:  Nucleic Acids Res       Date:  2008-05-31       Impact factor: 16.971

10.  ALS/FTD Mutation-Induced Phase Transition of FUS Liquid Droplets and Reversible Hydrogels into Irreversible Hydrogels Impairs RNP Granule Function.

Authors:  Tetsuro Murakami; Seema Qamar; Julie Qiaojin Lin; Gabriele S Kaminski Schierle; Eric Rees; Akinori Miyashita; Ana R Costa; Roger B Dodd; Fiona T S Chan; Claire H Michel; Deborah Kronenberg-Versteeg; Yi Li; Seung-Pil Yang; Yosuke Wakutani; William Meadows; Rodylyn Rose Ferry; Liang Dong; Gian Gaetano Tartaglia; Giorgio Favrin; Wen-Lang Lin; Dennis W Dickson; Mei Zhen; David Ron; Gerold Schmitt-Ulms; Paul E Fraser; Neil A Shneider; Christine Holt; Michele Vendruscolo; Clemens F Kaminski; Peter St George-Hyslop
Journal:  Neuron       Date:  2015-10-29       Impact factor: 17.173

View more
  106 in total

1.  NKNK: a New Essential Motif in the C-Terminal Domain of HIV-1 Group M Integrases.

Authors:  Marine Kanja; Pierre Cappy; Nicolas Levy; Oyndamola Oladosu; Sylvie Schmidt; Paola Rossolillo; Flore Winter; Romain Gasser; Christiane Moog; Marc Ruff; Matteo Negroni; Daniela Lener
Journal:  J Virol       Date:  2020-09-29       Impact factor: 5.103

Review 2.  Whole-Cell Models and Simulations in Molecular Detail.

Authors:  Michael Feig; Yuji Sugita
Journal:  Annu Rev Cell Dev Biol       Date:  2019-07-12       Impact factor: 13.827

3.  Hierarchical Assemblies of Supramolecular Coordination Complexes.

Authors:  Sougata Datta; Manik Lal Saha; Peter J Stang
Journal:  Acc Chem Res       Date:  2018-08-22       Impact factor: 22.384

Review 4.  Generalized Born Implicit Solvent Models for Biomolecules.

Authors:  Alexey V Onufriev; David A Case
Journal:  Annu Rev Biophys       Date:  2019-03-11       Impact factor: 12.981

5.  A unified analytical theory of heteropolymers for sequence-specific phase behaviors of polyelectrolytes and polyampholytes.

Authors:  Yi-Hsuan Lin; Jacob P Brady; Hue Sun Chan; Kingshuk Ghosh
Journal:  J Chem Phys       Date:  2020-01-31       Impact factor: 3.488

Review 6.  Exploring the molecular role of endostatin in diabetic neuropathy.

Authors:  Tuhin Mukherjee; Tapan Behl; Aayush Sehgal; Saurabh Bhatia; Harmanpreet Singh; Simona Bungau
Journal:  Mol Biol Rep       Date:  2021-02-09       Impact factor: 2.316

7.  Polyphosphates diminish solubility of a globular protein and thereby promote amyloid aggregation.

Authors:  Kenji Sasahara; Keiichi Yamaguchi; Masatomo So; Yuji Goto
Journal:  J Biol Chem       Date:  2019-08-22       Impact factor: 5.157

8.  Interplay between Short-Range Attraction and Long-Range Repulsion Controls Reentrant Liquid Condensation of Ribonucleoprotein-RNA Complexes.

Authors:  Ibraheem Alshareedah; Taranpreet Kaur; Jason Ngo; Hannah Seppala; Liz-Audrey Djomnang Kounatse; Wei Wang; Mahdi Muhammad Moosa; Priya R Banerjee
Journal:  J Am Chem Soc       Date:  2019-09-05       Impact factor: 15.419

9.  Electrostatic control of calcineurin's intrinsically-disordered regulatory domain binding to calmodulin.

Authors:  Bin Sun; Erik C Cook; Trevor P Creamer; Peter M Kekenes-Huskey
Journal:  Biochim Biophys Acta Gen Subj       Date:  2018-07-31       Impact factor: 3.770

10.  Computational Investigation on Electrostatic Loop Mutants Instigating Destabilization and Aggregation on Human SOD1 Protein Causing Amyotrophic Lateral Sclerosis.

Authors:  E Srinivasan; R Rajasekaran
Journal:  Protein J       Date:  2019-02       Impact factor: 2.371

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.