Literature DB >> 12668430

Electrostatic contributions to the stability of a thermophilic cold shock protein.

Huan-Xiang Zhou1, Feng Dong.   

Abstract

The thermophilic Bacillus caldolyticus cold shock protein (Bc-Csp) differs from the mesophilic Bacillus subtilis cold shock protein B (Bs-CspB) in 11 of the 66 residues. Stability measurements of Schmid and co-workers have implicated contributions of electrostatic interactions to the thermostability. To further elucidate the physical basis of the difference in stability, previously developed theoretical methods that treat electrostatic effects in both the folded and the unfolded states were used in this paper to study the effects of mutations, ionic strength, and temperature. For 27 mutations that narrow the difference in sequence between Bc-Csp and Bs-CspB, calculated changes in unfolding free energy (Delta G) and experimental results have a correlation coefficient of 0.98. Bc-Csp appears to use destabilization of the unfolded state by unfavorable charge-charge interactions as a mechanism for increasing stability. Accounting for the effects of ionic strength and temperature on the electrostatic free energies in both the folded and the unfolded states, explanations for two important experimental observations are presented. The disparate ionic strength dependences of Delta G for Bc-Csp and Bs-CspB were attributed to the difference in the total charges (-2e and -6e, respectively). A main contribution to the much higher unfolding entropy of Bs-CspB was found to come from the less favorable electrostatic interactions in the folded state. These results should provide insight for understanding the thermostability of other thermophilic proteins.

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Year:  2003        PMID: 12668430      PMCID: PMC1302788          DOI: 10.1016/S0006-3495(03)75027-9

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  21 in total

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Authors:  J M Sanchez-Ruiz; G I Makhatadze
Journal:  Trends Biotechnol       Date:  2001-04       Impact factor: 19.536

2.  Thermal stability and atomic-resolution crystal structure of the Bacillus caldolyticus cold shock protein.

Authors:  U Mueller; D Perl; F X Schmid; U Heinemann
Journal:  J Mol Biol       Date:  2000-04-07       Impact factor: 5.469

3.  Single surface stabilizer.

Authors:  C N Pace
Journal:  Nat Struct Biol       Date:  2000-05

4.  Two exposed amino acid residues confer thermostability on a cold shock protein.

Authors:  D Perl; U Mueller; U Heinemann; F X Schmid
Journal:  Nat Struct Biol       Date:  2000-05

5.  Charge-charge interactions influence the denatured state ensemble and contribute to protein stability.

Authors:  C N Pace; R W Alston; K L Shaw
Journal:  Protein Sci       Date:  2000-07       Impact factor: 6.725

6.  A Gaussian-chain model for treating residual charge-charge interactions in the unfolded state of proteins.

Authors:  Huan-Xiang Zhou
Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-12       Impact factor: 11.205

7.  Structural basis of thermostability in hyperthermophilic proteins, or "there's more than one way to skin a cat".

Authors:  G A Petsko
Journal:  Methods Enzymol       Date:  2001       Impact factor: 1.600

8.  Electrostatic stabilization of a thermophilic cold shock protein.

Authors:  D Perl; F X Schmid
Journal:  J Mol Biol       Date:  2001-10-19       Impact factor: 5.469

9.  Crystal structures of mutant forms of the Bacillus caldolyticus cold shock protein differing in thermal stability.

Authors:  H Delbrück; U Mueller; D Perl; F X Schmid; U Heinemann
Journal:  J Mol Biol       Date:  2001-10-19       Impact factor: 5.469

Review 10.  The stability of proteins in extreme environments.

Authors:  R Jaenicke; G Böhm
Journal:  Curr Opin Struct Biol       Date:  1998-12       Impact factor: 6.809

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  21 in total

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Authors:  Feng Dong; M Vijayakumar; Huan-Xiang Zhou
Journal:  Biophys J       Date:  2003-07       Impact factor: 4.033

2.  Conferring thermostability to mesophilic proteins through optimized electrostatic surfaces.

Authors:  Michael Torrez; Michael Schultehenrich; Dennis R Livesay
Journal:  Biophys J       Date:  2003-11       Impact factor: 4.033

3.  The efficiency of different salts to screen charge interactions in proteins: a Hofmeister effect?

Authors:  Raul Perez-Jimenez; Raquel Godoy-Ruiz; Beatriz Ibarra-Molero; Jose M Sanchez-Ruiz
Journal:  Biophys J       Date:  2004-04       Impact factor: 4.033

4.  Physical limits of cells and proteomes.

Authors:  Ken A Dill; Kingshuk Ghosh; Jeremy D Schmit
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-17       Impact factor: 11.205

5.  Conserved quantitative stability/flexibility relationships (QSFR) in an orthologous RNase H pair.

Authors:  Dennis R Livesay; Donald J Jacobs
Journal:  Proteins       Date:  2006-01-01

6.  Similarity and difference in the unfolding of thermophilic and mesophilic cold shock proteins studied by molecular dynamics simulations.

Authors:  Xiaoqin Huang; Huan-Xiang Zhou
Journal:  Biophys J       Date:  2006-07-14       Impact factor: 4.033

7.  Computational methods for biomolecular electrostatics.

Authors:  Feng Dong; Brett Olsen; Nathan A Baker
Journal:  Methods Cell Biol       Date:  2008       Impact factor: 1.441

8.  Amino acid contacts in proteins adapted to different temperatures: hydrophobic interactions and surface charges play a key role.

Authors:  Gisle Saelensminde; Øyvind Halskau; Inge Jonassen
Journal:  Extremophiles       Date:  2008-09-30       Impact factor: 2.395

9.  On the Dielectric Boundary in Poisson-Boltzmann Calculations.

Authors:  Harianto Tjong; Huan-Xiang Zhou
Journal:  J Chem Theory Comput       Date:  2008-02-21       Impact factor: 6.006

10.  Impacts of the charged residues mutation S48E/N62H on the thermostability and unfolding behavior of cold shock protein: insights from molecular dynamics simulation with Gō model.

Authors:  Ji-Guo Su; Xiao-Ming Han; Shu-Xin Zhao; Yan-Xue Hou; Xing-Yuan Li; Li-Sheng Qi; Ji-Hua Wang
Journal:  J Mol Model       Date:  2016-03-28       Impact factor: 1.810

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