Literature DB >> 8794878

The cupric geometry of blue copper proteins is not strained.

U Ryde1, M H Olsson, K Pierloot, B O Roos.   

Abstract

The geometry of several realistic models of the metal coordination sphere in the blue copper proteins has been optimised using high-level quantum chemical methods. The results show that the optimal vacuum structure of the Cu(II) models is virtually identical to the crystal structure of oxidised blue copper proteins. For the reduced forms, the optimised structure seems to be more tetrahedral than the one found in the proteins, but the energy difference between the two geometries is less than 5 kJ/mol, i.e. within the error limits of the method. Thus, the results raise strong doubts against hypotheses (entatic state and the induced-rack theory) suggesting that blue copper proteins force the oxidised metal coordination sphere into a structure similar to that preferred by Cu(I) in order to minimise the reorganisation energy of the electron transfer reaction. Instead, a small reorganisation energy seems to be reached by an appropriate choice of metal ligands. In particular, the cysteine thiolate ligand appears to be crucial, changing the preferred geometry of the oxidised complexes from square-planar to a more trigonal geometry.

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Year:  1996        PMID: 8794878     DOI: 10.1006/jmbi.1996.0484

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  21 in total

1.  NMR detection of multiple transitions to low-populated states in azurin.

Authors:  Dmitry M Korzhnev; B Göran Karlsson; Vladislav Yu Orekhov; Martin Billeter
Journal:  Protein Sci       Date:  2003-01       Impact factor: 6.725

2.  Flexibility of the metal-binding region in apo-cupredoxins.

Authors:  María-Eugenia Zaballa; Luciano A Abriata; Antonio Donaire; Alejandro J Vila
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-29       Impact factor: 11.205

3.  A high-resolution XAS study of aqueous Cu(II) in liquid and frozen solutions: pyramidal, polymorphic, and non-centrosymmetric.

Authors:  Patrick Frank; Maurizio Benfatto; Munzarin Qayyam; Britt Hedman; Keith O Hodgson
Journal:  J Chem Phys       Date:  2015-02-28       Impact factor: 3.488

4.  Establishing the entatic state in folding metallated Pseudomonas aeruginosa azurin.

Authors:  Chenghang Zong; Corey J Wilson; Tongye Shen; Pernilla Wittung-Stafshede; Steven L Mayo; Peter G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-14       Impact factor: 11.205

5.  The X-ray absorption spectroscopic model of the copper(II) imidazole complex ion in liquid aqueous solution: a strongly solvated square pyramid.

Authors:  Patrick Frank; Maurizio Benfatto; Britt Hedman; Keith O Hodgson
Journal:  Inorg Chem       Date:  2012-02-08       Impact factor: 5.165

6.  Thermodynamic equilibrium between blue and green copper sites and the role of the protein in controlling function.

Authors:  Somdatta Ghosh; Xiangjin Xie; Abhishek Dey; Yan Sun; Charles P Scholes; Edward I Solomon
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-12       Impact factor: 11.205

7.  Quantum chemical calculations of the reorganization energy of blue-copper proteins.

Authors:  M H Olsson; U Ryde; B O Roos
Journal:  Protein Sci       Date:  1998-12       Impact factor: 6.725

8.  Calculating the geometry and Raman spectrum of physiological bis(L-histidinato)copper(II): an assessment of DFT functionals for aqueous and isolated systems.

Authors:  Jasmina Sabolović; Michael Ramek; Marijana Marković
Journal:  J Mol Model       Date:  2017-09-26       Impact factor: 1.810

9.  Stabilization of protein structure through π-π interaction in the second coordination sphere of pseudoazurin.

Authors:  Takahide Yamaguchi; Yuko Nihei; Duncan E K Sutherland; Martin J Stillman; Takamitsu Kohzuma
Journal:  Protein Sci       Date:  2017-07-20       Impact factor: 6.725

10.  Structural studies by X-ray diffraction on metal substituted desulforedoxin, a rubredoxin-type protein.

Authors:  M Archer; A L Carvalho; S Teixeira; I Moura; J J Moura; F Rusnak; M J Romão
Journal:  Protein Sci       Date:  1999-07       Impact factor: 6.725

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