Literature DB >> 12426324

The value of complete microbial genome sequencing (you get what you pay for).

Claire M Fraser1, Jonathan A Eisen, Karen E Nelson, Ian T Paulsen, Steven L Salzberg.   

Abstract

Mesh:

Year:  2002        PMID: 12426324      PMCID: PMC135419          DOI: 10.1128/JB.184.23.6403-6405.2002

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


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  12 in total

1.  Functional analysis of gapped microbial genomes: amino acid metabolism of Thiobacillus ferrooxidans.

Authors:  E Selkov; R Overbeek; Y Kogan; L Chu; V Vonstein; D Holmes; S Silver; R Haselkorn; M Fonstein
Journal:  Proc Natl Acad Sci U S A       Date:  2000-03-28       Impact factor: 11.205

2.  Comparative genome sequencing for discovery of novel polymorphisms in Bacillus anthracis.

Authors:  Timothy D Read; Steven L Salzberg; Mihai Pop; Martin Shumway; Lowell Umayam; Lingxia Jiang; Erik Holtzapple; Joseph D Busch; Kimothy L Smith; James M Schupp; Daniel Solomon; Paul Keim; Claire M Fraser
Journal:  Science       Date:  2002-05-09       Impact factor: 47.728

3.  Nucleotide sequence of bacteriophage lambda DNA.

Authors:  F Sanger; A R Coulson; G F Hong; D F Hill; G B Petersen
Journal:  J Mol Biol       Date:  1982-12-25       Impact factor: 5.469

4.  Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1.

Authors:  O White; J A Eisen; J F Heidelberg; E K Hickey; J D Peterson; R J Dodson; D H Haft; M L Gwinn; W C Nelson; D L Richardson; K S Moffat; H Qin; L Jiang; W Pamphile; M Crosby; M Shen; J J Vamathevan; P Lam; L McDonald; T Utterback; C Zalewski; K S Makarova; L Aravind; M J Daly; K W Minton; R D Fleischmann; K A Ketchum; K E Nelson; S Salzberg; H O Smith; J C Venter; C M Fraser
Journal:  Science       Date:  1999-11-19       Impact factor: 47.728

5.  Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi.

Authors:  C M Fraser; S Casjens; W M Huang; G G Sutton; R Clayton; R Lathigra; O White; K A Ketchum; R Dodson; E K Hickey; M Gwinn; B Dougherty; J F Tomb; R D Fleischmann; D Richardson; J Peterson; A R Kerlavage; J Quackenbush; S Salzberg; M Hanson; R van Vugt; N Palmer; M D Adams; J Gocayne; J Weidman; T Utterback; L Watthey; L McDonald; P Artiach; C Bowman; S Garland; C Fuji; M D Cotton; K Horst; K Roberts; B Hatch; H O Smith; J C Venter
Journal:  Nature       Date:  1997-12-11       Impact factor: 49.962

6.  A bacterial genome in flux: the twelve linear and nine circular extrachromosomal DNAs in an infectious isolate of the Lyme disease spirochete Borrelia burgdorferi.

Authors:  S Casjens; N Palmer; R van Vugt; W M Huang; B Stevenson; P Rosa; R Lathigra; G Sutton; J Peterson; R J Dodson; D Haft; E Hickey; M Gwinn; O White; C M Fraser
Journal:  Mol Microbiol       Date:  2000-02       Impact factor: 3.501

7.  Whole-genome random sequencing and assembly of Haemophilus influenzae Rd.

Authors:  R D Fleischmann; M D Adams; O White; R A Clayton; E F Kirkness; A R Kerlavage; C J Bult; J F Tomb; B A Dougherty; J M Merrick
Journal:  Science       Date:  1995-07-28       Impact factor: 47.728

8.  DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae.

Authors:  J F Heidelberg; J A Eisen; W C Nelson; R A Clayton; M L Gwinn; R J Dodson; D H Haft; E K Hickey; J D Peterson; L Umayam; S R Gill; K E Nelson; T D Read; H Tettelin; D Richardson; M D Ermolaeva; J Vamathevan; S Bass; H Qin; I Dragoi; P Sellers; L McDonald; T Utterback; R D Fleishmann; W C Nierman; O White; S L Salzberg; H O Smith; R R Colwell; J J Mekalanos; J C Venter; C M Fraser
Journal:  Nature       Date:  2000-08-03       Impact factor: 49.962

9.  Single nucleotide polymorphisms in Mycobacterium tuberculosis structural genes.

Authors:  J M Musser
Journal:  Emerg Infect Dis       Date:  2001 May-Jun       Impact factor: 6.883

10.  Evidence for symmetric chromosomal inversions around the replication origin in bacteria.

Authors:  J A Eisen; J F Heidelberg; O White; S L Salzberg
Journal:  Genome Biol       Date:  2000-12-04       Impact factor: 13.583

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  56 in total

1.  MGView: an alignment and visualization tool to enhance gap closure of microbial genomes.

Authors:  Lisa Herron-Olson; John Freeman; Qing Zhang; Ernest F Retzel; Vivek Kapur
Journal:  Nucleic Acids Res       Date:  2003-09-01       Impact factor: 16.971

Review 2.  New metrics for comparative genomics.

Authors:  Michael Y Galperin; Eugene Kolker
Journal:  Curr Opin Biotechnol       Date:  2006-09-15       Impact factor: 9.740

3.  Complete genome sequence of Lactobacillus plantarum JDM1.

Authors:  Zhuo-Yang Zhang; Chang Liu; Yong-Zhang Zhu; Yi Zhong; Yong-Qiang Zhu; Hua-Jun Zheng; Guo-Ping Zhao; Sheng-Yue Wang; Xiao-Kui Guo
Journal:  J Bacteriol       Date:  2009-05-22       Impact factor: 3.490

4.  Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data.

Authors:  Chen-Shan Chin; David H Alexander; Patrick Marks; Aaron A Klammer; James Drake; Cheryl Heiner; Alicia Clum; Alex Copeland; John Huddleston; Evan E Eichler; Stephen W Turner; Jonas Korlach
Journal:  Nat Methods       Date:  2013-05-05       Impact factor: 28.547

Review 5.  Value of a newly sequenced bacterial genome.

Authors:  Eudes Gv Barbosa; Flavia F Aburjaile; Rommel Tj Ramos; Adriana R Carneiro; Yves Le Loir; Jan Baumbach; Anderson Miyoshi; Artur Silva; Vasco Azevedo
Journal:  World J Biol Chem       Date:  2014-05-26

Review 6.  Navigating Microbiological Food Safety in the Era of Whole-Genome Sequencing.

Authors:  J Ronholm; Neda Nasheri; Nicholas Petronella; Franco Pagotto
Journal:  Clin Microbiol Rev       Date:  2016-10       Impact factor: 26.132

7.  Multiplexed Non-barcoded Long-Read Sequencing and Assembling Genomes of Bacillus Strains in Error-Free Simulations.

Authors:  Jiating Qian; Qiao Meng; Yifan Feng; Xuanxuan Mao; Yayue Ling; Jie Li
Journal:  Curr Microbiol       Date:  2019-11-13       Impact factor: 2.188

8.  Finishing genomes with limited resources: lessons from an ensemble of microbial genomes.

Authors:  Niranjan Nagarajan; Christopher Cook; Mariapia Di Bonaventura; Hong Ge; Allen Richards; Kimberly A Bishop-Lilly; Robert DeSalle; Timothy D Read; Mihai Pop
Journal:  BMC Genomics       Date:  2010-04-16       Impact factor: 3.969

9.  De novo assembly of a 40 Mb eukaryotic genome from short sequence reads: Sordaria macrospora, a model organism for fungal morphogenesis.

Authors:  Minou Nowrousian; Jason E Stajich; Meiling Chu; Ines Engh; Eric Espagne; Karen Halliday; Jens Kamerewerd; Frank Kempken; Birgit Knab; Hsiao-Che Kuo; Heinz D Osiewacz; Stefanie Pöggeler; Nick D Read; Stephan Seiler; Kristina M Smith; Denise Zickler; Ulrich Kück; Michael Freitag
Journal:  PLoS Genet       Date:  2010-04-08       Impact factor: 5.917

10.  Read length and repeat resolution: exploring prokaryote genomes using next-generation sequencing technologies.

Authors:  Matt J Cahill; Claudio U Köser; Nicholas E Ross; John A C Archer
Journal:  PLoS One       Date:  2010-07-12       Impact factor: 3.240

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