Literature DB >> 10567266

Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1.

O White1, J A Eisen, J F Heidelberg, E K Hickey, J D Peterson, R J Dodson, D H Haft, M L Gwinn, W C Nelson, D L Richardson, K S Moffat, H Qin, L Jiang, W Pamphile, M Crosby, M Shen, J J Vamathevan, P Lam, L McDonald, T Utterback, C Zalewski, K S Makarova, L Aravind, M J Daly, K W Minton, R D Fleischmann, K A Ketchum, K E Nelson, S Salzberg, H O Smith, J C Venter, C M Fraser.   

Abstract

The complete genome sequence of the radiation-resistant bacterium Deinococcus radiodurans R1 is composed of two chromosomes (2,648,638 and 412,348 base pairs), a megaplasmid (177,466 base pairs), and a small plasmid (45,704 base pairs), yielding a total genome of 3,284, 156 base pairs. Multiple components distributed on the chromosomes and megaplasmid that contribute to the ability of D. radiodurans to survive under conditions of starvation, oxidative stress, and high amounts of DNA damage were identified. Deinococcus radiodurans represents an organism in which all systems for DNA repair, DNA damage export, desiccation and starvation recovery, and genetic redundancy are present in one cell.

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Year:  1999        PMID: 10567266      PMCID: PMC4147723          DOI: 10.1126/science.286.5444.1571

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  34 in total

1.  The Deinococcus-Thermus phylum and the effect of rRNA composition on phylogenetic tree construction.

Authors:  W G Weisburg; S J Giovannoni; C R Woese
Journal:  Syst Appl Microbiol       Date:  1989       Impact factor: 4.022

Review 2.  The MutT proteins or "Nudix" hydrolases, a family of versatile, widely distributed, "housecleaning" enzymes.

Authors:  M J Bessman; D N Frick; S F O'Handley
Journal:  J Biol Chem       Date:  1996-10-11       Impact factor: 5.157

3.  Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea.

Authors:  E V Koonin; A R Mushegian; M Y Galperin; D R Walker
Journal:  Mol Microbiol       Date:  1997-08       Impact factor: 3.501

4.  Structural and functional similarities between the SbcCD proteins of Escherichia coli and the RAD50 and MRE11 (RAD32) recombination and repair proteins of yeast.

Authors:  G J Sharples; D R Leach
Journal:  Mol Microbiol       Date:  1995-09       Impact factor: 3.501

5.  Micrococcus radiodurans surface exonuclease. Dimer to monomer conversion by ionizing radiation-generated aqueous free radicals.

Authors:  R E Mitchel
Journal:  Biochim Biophys Acta       Date:  1980-01-24

6.  Mutation of D. radiodurans in a gene homologous to ruvB of E. coli.

Authors:  S Kitayama; M Kohoroku; A Takagi; H Itoh
Journal:  Mutat Res       Date:  1997-11       Impact factor: 2.433

7.  Microbial gene identification using interpolated Markov models.

Authors:  S L Salzberg; A L Delcher; S Kasif; O White
Journal:  Nucleic Acids Res       Date:  1998-01-15       Impact factor: 16.971

Review 8.  Functions of the gene products of Escherichia coli.

Authors:  M Riley
Journal:  Microbiol Rev       Date:  1993-12

9.  Defective excision repair in a mutant of Micrococcus radiodurans hypermutable by some monofunctional alkylating agents.

Authors:  P R Tempest; B E Moseley
Journal:  Mol Gen Genet       Date:  1980

10.  Identification, sequencing, and targeted mutagenesis of a DNA polymerase gene required for the extreme radioresistance of Deinococcus radiodurans.

Authors:  P D Gutman; P Fuchs; L Ouyang; K W Minton
Journal:  J Bacteriol       Date:  1993-06       Impact factor: 3.490

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  289 in total

1.  The crystal structure of the ttCsaA protein: an export-related chaperone from Thermus thermophilus.

Authors:  S Kawaguchi; J Müller; D Linde; S Kuramitsu; T Shibata; Y Inoue; D G Vassylyev; S Yokoyama
Journal:  EMBO J       Date:  2001-02-01       Impact factor: 11.598

2.  The Comprehensive Microbial Resource.

Authors:  J D Peterson; L A Umayam; T Dickinson; E K Hickey; O White
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

3.  Lineage-specific gene expansions in bacterial and archaeal genomes.

Authors:  I K Jordan; K S Makarova; J L Spouge; Y I Wolf; E V Koonin
Journal:  Genome Res       Date:  2001-04       Impact factor: 9.043

4.  A phylogenomic study of DNA repair genes, proteins, and processes.

Authors:  J A Eisen; P C Hanawalt
Journal:  Mutat Res       Date:  1999-12-07       Impact factor: 2.433

5.  Genetic evidence that the uvsE gene product of Deinococcus radiodurans R1 is a UV damage endonuclease.

Authors:  Ashlee M Earl; Sara K Rankin; Kwang-Pyo Kim; Oleana N Lamendola; John R Battista
Journal:  J Bacteriol       Date:  2002-02       Impact factor: 3.490

6.  Identification and distribution of new insertion sequences in the genome of alkaliphilic Bacillus halodurans C-125.

Authors:  H Takami; C G Han; Y Takaki; E Ohtsubo
Journal:  J Bacteriol       Date:  2001-07       Impact factor: 3.490

7.  Degradation of aromatics and chloroaromatics by Pseudomonas sp. strain B13: cloning, characterization, and analysis of sequences encoding 3-oxoadipate:succinyl-coenzyme A (CoA) transferase and 3-oxoadipyl-CoA thiolase.

Authors:  Markus Göbel; Kerstin Kassel-Cati; Eberhard Schmidt; Walter Reineke
Journal:  J Bacteriol       Date:  2002-01       Impact factor: 3.490

Review 8.  A cut above: discovery of an alternative excision repair pathway in bacteria.

Authors:  Bennett Van Houten; Jonathan A Eisen; Philip C Hanawalt
Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-05       Impact factor: 11.205

9.  Genomic analysis of the F3031 Brazilian purpuric fever clone of Haemophilus influenzae biogroup aegyptius by PCR-based subtractive hybridization.

Authors:  Laura M Smoot; Deanna D Franke; Glen McGillivary; Luis A Actis
Journal:  Infect Immun       Date:  2002-05       Impact factor: 3.441

10.  Biosynthetic gene cluster of simocyclinone, a natural multihybrid antibiotic.

Authors:  A Trefzer; S Pelzer; J Schimana; S Stockert; C Bihlmaier; H-P Fiedler; K Welzel; A Vente; A Bechthold
Journal:  Antimicrob Agents Chemother       Date:  2002-05       Impact factor: 5.191

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