Literature DB >> 19465650

Complete genome sequence of Lactobacillus plantarum JDM1.

Zhuo-Yang Zhang1, Chang Liu, Yong-Zhang Zhu, Yi Zhong, Yong-Qiang Zhu, Hua-Jun Zheng, Guo-Ping Zhao, Sheng-Yue Wang, Xiao-Kui Guo.   

Abstract

Lactobacillus plantarum is a lactic acid bacterium (LAB) species commonly used as a probiotic. We have sequenced the genome of Lactobacillus plantarum JDM1, which is a Chinese commercial LAB with several probiotic functions, using a GS 20 system. We recommend that each commercial probiotic strain should undergo complete genome sequencing to ensure safety and stability.

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Year:  2009        PMID: 19465650      PMCID: PMC2715720          DOI: 10.1128/JB.00587-09

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  9 in total

Review 1.  The value of complete microbial genome sequencing (you get what you pay for).

Authors:  Claire M Fraser; Jonathan A Eisen; Karen E Nelson; Ian T Paulsen; Steven L Salzberg
Journal:  J Bacteriol       Date:  2002-12       Impact factor: 3.490

2.  Complete DNA sequence and analysis of two cryptic plasmids isolated from Lactobacillus plantarum.

Authors:  Ren Daming; Wang Yinyu; Wang Zilai; Cui Jun; Lan Hekui; Zhou Jingye
Journal:  Plasmid       Date:  2003-07       Impact factor: 3.466

3.  Genome sequencing in microfabricated high-density picolitre reactors.

Authors:  Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

4.  Base-calling of automated sequencer traces using phred. I. Accuracy assessment.

Authors:  B Ewing; L Hillier; M C Wendl; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

5.  Consed: a graphical tool for sequence finishing.

Authors:  D Gordon; C Abajian; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

Review 6.  Lactic acid bacteria and human clinical infection.

Authors:  M Aguirre; M D Collins
Journal:  J Appl Bacteriol       Date:  1993-08

7.  Comparative genomics of the lactic acid bacteria.

Authors:  K Makarova; A Slesarev; Y Wolf; A Sorokin; B Mirkin; E Koonin; A Pavlov; N Pavlova; V Karamychev; N Polouchine; V Shakhova; I Grigoriev; Y Lou; D Rohksar; S Lucas; K Huang; D M Goodstein; T Hawkins; V Plengvidhya; D Welker; J Hughes; Y Goh; A Benson; K Baldwin; J-H Lee; I Díaz-Muñiz; B Dosti; V Smeianov; W Wechter; R Barabote; G Lorca; E Altermann; R Barrangou; B Ganesan; Y Xie; H Rawsthorne; D Tamir; C Parker; F Breidt; J Broadbent; R Hutkins; D O'Sullivan; J Steele; G Unlu; M Saier; T Klaenhammer; P Richardson; S Kozyavkin; B Weimer; D Mills
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-09       Impact factor: 11.205

8.  Complete genome sequence of Lactobacillus plantarum WCFS1.

Authors:  Michiel Kleerebezem; Jos Boekhorst; Richard van Kranenburg; Douwe Molenaar; Oscar P Kuipers; Rob Leer; Renato Tarchini; Sander A Peters; Hans M Sandbrink; Mark W E J Fiers; Willem Stiekema; René M Klein Lankhorst; Peter A Bron; Sally M Hoffer; Masja N Nierop Groot; Robert Kerkhoven; Maaike de Vries; Björn Ursing; Willem M de Vos; Roland J Siezen
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-03       Impact factor: 11.205

9.  Intraspecies genomic diversity and natural population structure of the meat-borne lactic acid bacterium Lactobacillus sakei.

Authors:  Stéphane Chaillou; Marie Daty; Fabienne Baraige; Anne-Marie Dudez; Patricia Anglade; Rhys Jones; Carl-Alfred Alpert; Marie-Christine Champomier-Vergès; Monique Zagorec
Journal:  Appl Environ Microbiol       Date:  2008-12-29       Impact factor: 4.792

  9 in total
  34 in total

1.  Metatranscriptome analysis for insight into whole-ecosystem gene expression during spontaneous wheat and spelt sourdough fermentations.

Authors:  Stefan Weckx; Joke Allemeersch; Roel Van der Meulen; Gino Vrancken; Geert Huys; Peter Vandamme; Paul Van Hummelen; Luc De Vuyst
Journal:  Appl Environ Microbiol       Date:  2010-11-19       Impact factor: 4.792

2.  Complete genome sequence of the probiotic Lactobacillus plantarum ST-III.

Authors:  Yinyu Wang; Chen Chen; Lianzhong Ai; Fangfang Zhou; Zhemin Zhou; Lei Wang; Hao Zhang; Wei Chen; Benheng Guo
Journal:  J Bacteriol       Date:  2010-10-29       Impact factor: 3.490

3.  NHE8 plays an important role in mucosal protection via its effect on bacterial adhesion.

Authors:  Chang Liu; Hua Xu; Bo Zhang; Malin E V Johansson; Jing Li; Gunnar C Hansson; Fayez K Ghishan
Journal:  Am J Physiol Cell Physiol       Date:  2013-05-08       Impact factor: 4.249

4.  Comparative genomic analysis of Lactobacillus plantarum ZJ316 reveals its genetic adaptation and potential probiotic profiles.

Authors:  Ping Li; Xuan Li; Qing Gu; Xiu-Yu Lou; Xiao-Mei Zhang; Da-Feng Song; Chen Zhang
Journal:  J Zhejiang Univ Sci B       Date:  2016-08       Impact factor: 3.066

5.  Complete genome sequence of Lactobacillus kefiranofaciens ZW3.

Authors:  Yanping Wang; Jingrui Wang; Zaheer Ahmed; Xiaojia Bai; Jinju Wang
Journal:  J Bacteriol       Date:  2011-06-24       Impact factor: 3.490

6.  Genome sequence of Lactobacillus pentosus IG1, a strain isolated from Spanish-style green olive fermentations.

Authors:  Antonio Maldonado-Barragán; Belén Caballero-Guerrero; Helena Lucena-Padrós; José Luis Ruiz-Barba
Journal:  J Bacteriol       Date:  2011-10       Impact factor: 3.490

7.  Adaptation of Lactobacillus plantarum IMDO 130201, a wheat sourdough isolate, to growth in wheat sourdough simulation medium at different pH values through differential gene expression.

Authors:  Gino Vrancken; Luc De Vuyst; Tom Rimaux; Joke Allemeersch; Stefan Weckx
Journal:  Appl Environ Microbiol       Date:  2011-04-01       Impact factor: 4.792

8.  Genome sequence of the naturally plasmid-free Lactobacillus plantarum strain NC8 (CCUG 61730).

Authors:  Lars Axelsson; Ida Rud; Kristine Naterstad; Hans Blom; Bernadet Renckens; Jos Boekhorst; Michiel Kleerebezem; Sacha van Hijum; Roland J Siezen
Journal:  J Bacteriol       Date:  2012-05       Impact factor: 3.490

9.  Characterization of two virulent phages of Lactobacillus plantarum.

Authors:  Mariángeles Briggiler Marcó; Josiane E Garneau; Denise Tremblay; Andrea Quiberoni; Sylvain Moineau
Journal:  Appl Environ Microbiol       Date:  2012-10-05       Impact factor: 4.792

10.  GtfA and GtfB are both required for protein O-glycosylation in Lactobacillus plantarum.

Authors:  I-Chiao Lee; Iris I van Swam; Satoru Tomita; Pierre Morsomme; Thomas Rolain; Pascal Hols; Michiel Kleerebezem; Peter A Bron
Journal:  J Bacteriol       Date:  2014-02-14       Impact factor: 3.490

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