Literature DB >> 12411478

Structural basis for the oxidation of thiosulfate by a sulfur cycle enzyme.

Vicki A Bamford1, Stefano Bruno, Tim Rasmussen, Corinne Appia-Ayme, Myles R Cheesman, Ben C Berks, Andrew M Hemmings.   

Abstract

Reduced inorganic sulfur compounds are utilized by many bacteria as electron donors to photosynthetic or respiratory electron transport chains. This metabolism is a key component of the biogeochemical sulfur cycle. The SoxAX protein is a heterodimeric c-type cytochrome involved in thiosulfate oxidation. The crystal structures of SoxAX from the photosynthetic bacterium Rhodovulum sulfidophilum have been solved at 1.75 A resolution in the oxidized state and at 1.5 A resolution in the dithionite-reduced state, providing the first structural insights into the enzymatic oxidation of thiosulfate. The SoxAX active site contains a haem with unprecedented cysteine persulfide (cysteine sulfane) coordination. This unusual post-translational modification is also seen in sulfurtransferases such as rhodanese. Intriguingly, this enzyme shares further active site characteristics with SoxAX such as an adjacent conserved arginine residue and a strongly positive electrostatic potential. These similarities have allowed us to suggest a catalytic mechanism for enzymatic thiosulfate oxidation. The atomic coordinates and experimental structure factors have been deposited in the PDB with the accession codes 1H31, 1H32 and 1H33.

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Year:  2002        PMID: 12411478      PMCID: PMC131063          DOI: 10.1093/emboj/cdf566

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  43 in total

Review 1.  Databases in protein crystallography.

Authors:  G J Kleywegt; T A Jones
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-11-01

2.  Novel genes coding for lithotrophic sulfur oxidation of Paracoccus pantotrophus GB17.

Authors:  C G Friedrich; A Quentmeier; F Bardischewsky; D Rother; R Kraft; S Kostka; H Prinz
Journal:  J Bacteriol       Date:  2000-09       Impact factor: 3.490

3.  Novel genes of the sox gene cluster, mutagenesis of the flavoprotein SoxF, and evidence for a general sulfur-oxidizing system in Paracoccus pantotrophus GB17.

Authors:  D Rother; H J Henrich; A Quentmeier; F Bardischewsky; C G Friedrich
Journal:  J Bacteriol       Date:  2001-08       Impact factor: 3.490

Review 4.  Sulfur oxidation by phototrophic bacteria.

Authors:  D C Brune
Journal:  Biochim Biophys Acta       Date:  1989-07-13

5.  Protein folding and protein evolution: common folding nucleus in different subfamilies of c-type cytochromes?

Authors:  O B Ptitsyn
Journal:  J Mol Biol       Date:  1998-05-08       Impact factor: 5.469

Review 6.  Principles of protein-protein interactions.

Authors:  S Jones; J M Thornton
Journal:  Proc Natl Acad Sci U S A       Date:  1996-01-09       Impact factor: 11.205

7.  Novel heme ligation in a c-type cytochrome involved in thiosulfate oxidation: EPR and MCD of SoxAX from Rhodovulum sulfidophilum.

Authors:  M R Cheesman; P J Little; B C Berks
Journal:  Biochemistry       Date:  2001-09-04       Impact factor: 3.162

8.  Characterization of the heme in human cystathionine beta-synthase by X-ray absorption and electron paramagnetic resonance spectroscopies.

Authors:  S Ojha; J Hwang; O Kabil; J E Penner-Hahn; R Banerjee
Journal:  Biochemistry       Date:  2000-08-29       Impact factor: 3.162

Review 9.  Protein-sulfenic acids: diverse roles for an unlikely player in enzyme catalysis and redox regulation.

Authors:  A Claiborne; J I Yeh; T C Mallett; J Luba; E J Crane; V Charrier; D Parsonage
Journal:  Biochemistry       Date:  1999-11-23       Impact factor: 3.162

10.  Automated MAD and MIR structure solution.

Authors:  T C Terwilliger; J Berendzen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-04
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  34 in total

1.  Structural basis for specificity and promiscuity in a carrier protein/enzyme system from the sulfur cycle.

Authors:  Daniel B Grabarczyk; Paul E Chappell; Steven Johnson; Lukas S Stelzl; Susan M Lea; Ben C Berks
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-11       Impact factor: 11.205

2.  Crystallization, preliminary crystallographic analysis and phasing of the thiosulfate-binding protein SoxY from Chlorobium limicola f. thiosulfatophilum.

Authors:  Jan Stout; Lina De Smet; Santosh Panjikar; Manfred S Weiss; Savvas N Savvides; Jozef Van Beeumen
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-10-20

3.  A systematic investigation of multiheme c-type cytochromes in prokaryotes.

Authors:  Shailesh Sharma; Gabriele Cavallaro; Antonio Rosato
Journal:  J Biol Inorg Chem       Date:  2010-01-19       Impact factor: 3.358

4.  Production, crystallization and preliminary crystallographic analysis of Allochromatium vinosum thiosulfate dehydrogenase TsdA, an unusual acidophilic c-type cytochrome.

Authors:  José A Brito; André Gutierres; Kevin Denkmann; Christiane Dahl; Margarida Archer
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-09-25       Impact factor: 1.056

5.  Electron Accepting Units of the Diheme Cytochrome c TsdA, a Bifunctional Thiosulfate Dehydrogenase/Tetrathionate Reductase.

Authors:  Julia M Kurth; José A Brito; Jula Reuter; Alexander Flegler; Tobias Koch; Thomas Franke; Eva-Maria Klein; Sam F Rowe; Julea N Butt; Kevin Denkmann; Inês A C Pereira; Margarida Archer; Christiane Dahl
Journal:  J Biol Chem       Date:  2016-09-30       Impact factor: 5.157

Review 6.  The bacterial SoxAX cytochromes.

Authors:  Ulrike Kappler; Megan J Maher
Journal:  Cell Mol Life Sci       Date:  2012-08-21       Impact factor: 9.261

7.  Redox and chemical activities of the hemes in the sulfur oxidation pathway enzyme SoxAX.

Authors:  Justin M Bradley; Sophie J Marritt; Margaret A Kihlken; Kate Haynes; Andrew M Hemmings; Ben C Berks; Myles R Cheesman; Julea N Butt
Journal:  J Biol Chem       Date:  2012-10-11       Impact factor: 5.157

8.  Mechanism for the hydrolysis of a sulfur-sulfur bond based on the crystal structure of the thiosulfohydrolase SoxB.

Authors:  Véronique Sauvé; Pietro Roversi; Kirstin J Leath; Elspeth F Garman; Robin Antrobus; Susan M Lea; Ben C Berks
Journal:  J Biol Chem       Date:  2009-06-16       Impact factor: 5.157

9.  Kinetic enrichment of 34S during proteobacterial thiosulfate oxidation and the conserved role of SoxB in S-S bond breaking.

Authors:  Masrure Alam; Prosenjit Pyne; Aninda Mazumdar; Aditya Peketi; Wriddhiman Ghosh
Journal:  Appl Environ Microbiol       Date:  2013-05-17       Impact factor: 4.792

10.  Dynamics of metabolic activities and gene expression in the Roseobacter clade bacterium Phaeobacter sp. strain MED193 during growth with thiosulfate.

Authors:  Saraladevi Muthusamy; Federico Baltar; José M González; Jarone Pinhassi
Journal:  Appl Environ Microbiol       Date:  2014-08-29       Impact factor: 4.792

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