Literature DB >> 17077486

Crystallization, preliminary crystallographic analysis and phasing of the thiosulfate-binding protein SoxY from Chlorobium limicola f. thiosulfatophilum.

Jan Stout1, Lina De Smet, Santosh Panjikar, Manfred S Weiss, Savvas N Savvides, Jozef Van Beeumen.   

Abstract

The 22 kDa SoxYZ protein complex from the green sulfur bacterium Chlorobium limicola f. thiosulfatophilum is a central player in the sulfur-oxidizing (Sox) enzyme system of the organism by activating thiosulfate for oxidation by SoxXA and SoxB. It has been proposed that SoxYZ exists as a heterodimer or heterotetramer, but the properties and role of the individual components of the complex thus far remain unknown. Here, the heterologous expression, purification, and the crystallization of stable tetrameric SoxY are reported. Crystals of SoxY diffract to 2.15 A resolution and belong to space group C222(1), with unit-cell parameters a = 41.22, b = 120.11, c = 95.30 A. MIRAS data from Pt(2+)- and Hg(2+)-derivatized SoxY crystals resulted in an interpretable electron-density map at 3 A resolution after density modification.

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Year:  2006        PMID: 17077486      PMCID: PMC2225222          DOI: 10.1107/S1744309106036566

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  21 in total

1.  Novel genes coding for lithotrophic sulfur oxidation of Paracoccus pantotrophus GB17.

Authors:  C G Friedrich; A Quentmeier; F Bardischewsky; D Rother; R Kraft; S Kostka; H Prinz
Journal:  J Bacteriol       Date:  2000-09       Impact factor: 3.490

2.  Novel genes of the sox gene cluster, mutagenesis of the flavoprotein SoxF, and evidence for a general sulfur-oxidizing system in Paracoccus pantotrophus GB17.

Authors:  D Rother; H J Henrich; A Quentmeier; F Bardischewsky; C G Friedrich
Journal:  J Bacteriol       Date:  2001-08       Impact factor: 3.490

3.  The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium.

Authors:  Jonathan A Eisen; Karen E Nelson; Ian T Paulsen; John F Heidelberg; Martin Wu; Robert J Dodson; Robert Deboy; Michelle L Gwinn; William C Nelson; Daniel H Haft; Erin K Hickey; Jeremy D Peterson; A Scott Durkin; James L Kolonay; Fan Yang; Ingeborg Holt; Lowell A Umayam; Tanya Mason; Michael Brenner; Terrance P Shea; Debbie Parksey; William C Nierman; Tamara V Feldblyum; Cheryl L Hansen; M Brook Craven; Diana Radune; Jessica Vamathevan; Hoda Khouri; Owen White; Tanja M Gruber; Karen A Ketchum; J Craig Venter; Hervé Tettelin; Donald A Bryant; Claire M Fraser
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-01       Impact factor: 11.205

4.  Substructure solution with SHELXD.

Authors:  Thomas R Schneider; George M Sheldrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-09-28

5.  Structural basis for the oxidation of thiosulfate by a sulfur cycle enzyme.

Authors:  Vicki A Bamford; Stefano Bruno; Tim Rasmussen; Corinne Appia-Ayme; Myles R Cheesman; Ben C Berks; Andrew M Hemmings
Journal:  EMBO J       Date:  2002-11-01       Impact factor: 11.598

6.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

7.  A soxA gene, encoding a diheme cytochrome c, and a sox locus, essential for sulfur oxidation in a new sulfur lithotrophic bacterium.

Authors:  P N Mukhopadhyaya; C Deb; C Lahiri; P Roy
Journal:  J Bacteriol       Date:  2000-08       Impact factor: 3.490

8.  The cysteine residue of the SoxY protein as the active site of protein-bound sulfur oxidation of Paracoccus pantotrophus GB17.

Authors:  A Quentmeier; C G Friedrich
Journal:  FEBS Lett       Date:  2001-08-17       Impact factor: 4.124

9.  Sulfur oxidation in Paracoccus pantotrophus: interaction of the sulfur-binding protein SoxYZ with the dimanganese SoxB protein.

Authors:  Armin Quentmeier; Petra Hellwig; Frank Bardischewsky; Gerlinde Grelle; Regine Kraft; Cornelius G Friedrich
Journal:  Biochem Biophys Res Commun       Date:  2003-12-26       Impact factor: 3.575

10.  Automated MAD and MIR structure solution.

Authors:  T C Terwilliger; J Berendzen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-04
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  1 in total

1.  X-ray crystallographic analysis of the sulfur carrier protein SoxY from Chlorobium limicola f. thiosulfatophilum reveals a tetrameric structure.

Authors:  Jan Stout; Gonzalez Van Driessche; Savvas N Savvides; Jozef Van Beeumen
Journal:  Protein Sci       Date:  2007-02-27       Impact factor: 6.725

  1 in total

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