Literature DB >> 10089488

Databases in protein crystallography.

G J Kleywegt1, T A Jones.   

Abstract

Applications of structural databases in the protein crystallographic structure determination process are reviewed, using mostly examples from work carried out by the authors. Four application areas are discussed: model building, model refinement, model validation and model analysis.

Mesh：

Year:  1998        PMID： 10089488     DOI： 10.1107/s0907444998007100

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN： 0907-4449


  150 in total

1.  Crystal structures of Mycobacterium tuberculosis RecA and its complex with ADP-AlF(4): implications for decreased ATPase activity and molecular aggregation.

Authors:  S Datta; M M Prabu; M B Vaze; N Ganesh; N R Chandra; K Muniyappa; M Vijayan
Journal:  Nucleic Acids Res       Date:  2000-12-15       Impact factor: 16.971

2.  Joint refinement as a tool for thorough comparison between NMR and X-ray data and structures of HU protein.

Authors:  M L Raves; J F Doreleijer; H Vis; C E Vorgias; K S Wilson; R Kaptei
Journal:  J Biomol NMR       Date:  2001-11       Impact factor: 2.835

3.  Structural basis of transcription: alpha-amanitin-RNA polymerase II cocrystal at 2.8 A resolution.

Authors:  David A Bushnell; Patrick Cramer; Roger D Kornberg
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-22       Impact factor: 11.205

4.  Crystal structure of the quorum-sensing protein LuxS reveals a catalytic metal site.

Authors:  M T Hilgers; M L Ludwig
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-11       Impact factor: 11.205

Review 5.  Advances in determination of a high-resolution three-dimensional structure of rhodopsin, a model of G-protein-coupled receptors (GPCRs).

Authors:  D C Teller; T Okada; C A Behnke; K Palczewski; R E Stenkamp
Journal:  Biochemistry       Date:  2001-07-03       Impact factor: 3.162

6.  Crystal structure of a bifunctional aldolase-dehydrogenase: sequestering a reactive and volatile intermediate.

Authors:  Babu A Manjasetty; Justin Powlowski; Alice Vrielink
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-22       Impact factor: 11.205

7.  Crystal structures of Mycobacterium smegmatis RecA and its nucleotide complexes.

Authors:  S Datta; R Krishna; N Ganesh; Nagasuma R Chandra; K Muniyappa; M Vijayan
Journal:  J Bacteriol       Date:  2003-07       Impact factor: 3.490

8.  Crystal structures of two cyanobacterial response regulators in apo- and phosphorylated form reveal a novel dimerization motif of phytochrome-associated response regulators.

Authors:  C Benda; C Scheufler; N Tandeau de Marsac; W Gärtner
Journal:  Biophys J       Date:  2004-07       Impact factor: 4.033

9.  Molecular recognition of the nucleosomal "supergroove".

Authors:  Rajeswari S Edayathumangalam; Philipp Weyermann; Joel M Gottesfeld; Peter B Dervan; Karolin Luger
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-20       Impact factor: 11.205

10.  Structure and mechanism of a bacterial haloalcohol dehalogenase: a new variation of the short-chain dehydrogenase/reductase fold without an NAD(P)H binding site.

Authors:  R M de Jong; J J W Tiesinga; H J Rozeboom; K H Kalk; L Tang; D B Janssen; B W Dijkstra
Journal:  EMBO J       Date:  2003-10-01       Impact factor: 11.598
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