Literature DB >> 8552589

Principles of protein-protein interactions.

S Jones1, J M Thornton.   

Abstract

This review examines protein complexes in the Brookhaven Protein Databank to gain a better understanding of the principles governing the interactions involved in protein-protein recognition. The factors that influence the formation of protein-protein complexes are explored in four different types of protein-protein complexes--homodimeric proteins, heterodimeric proteins, enzyme-inhibitor complexes, and antibody-protein complexes. The comparison between the complexes highlights differences that reflect their biological roles.

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Year:  1996        PMID: 8552589      PMCID: PMC40170          DOI: 10.1073/pnas.93.1.13

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  43 in total

1.  Structure of a bacterial enzyme regulated by phosphorylation, isocitrate dehydrogenase.

Authors:  J H Hurley; P E Thorsness; V Ramalingam; N H Helmers; D E Koshland; R M Stroud
Journal:  Proc Natl Acad Sci U S A       Date:  1989-11       Impact factor: 11.205

Review 2.  Antibody-antigen interactions: new structures and new conformational changes.

Authors:  I A Wilson; R L Stanfield
Journal:  Curr Opin Struct Biol       Date:  1994-12       Impact factor: 6.809

3.  PUZZLE: a new method for automated protein docking based on surface shape complementarity.

Authors:  M Helmer-Citterich; A Tramontano
Journal:  J Mol Biol       Date:  1994-01-21       Impact factor: 5.469

4.  Hydrophobic docking: a proposed enhancement to molecular recognition techniques.

Authors:  I A Vakser; C Aflalo
Journal:  Proteins       Date:  1994-12

Review 5.  Protein-protein interactions: a review of protein dimer structures.

Authors:  S Jones; J M Thornton
Journal:  Prog Biophys Mol Biol       Date:  1995       Impact factor: 3.667

6.  Satisfying hydrogen bonding potential in proteins.

Authors:  I K McDonald; J M Thornton
Journal:  J Mol Biol       Date:  1994-05-20       Impact factor: 5.469

7.  Shape complementarity at protein/protein interfaces.

Authors:  M C Lawrence; P M Colman
Journal:  J Mol Biol       Date:  1993-12-20       Impact factor: 5.469

8.  Domain closure in lactoferrin. Two hinges produce a see-saw motion between alternative close-packed interfaces.

Authors:  M Gerstein; B F Anderson; G E Norris; E N Baker; A M Lesk; C Chothia
Journal:  J Mol Biol       Date:  1993-11-20       Impact factor: 5.469

9.  Major antigen-induced domain rearrangements in an antibody.

Authors:  R L Stanfield; M Takimoto-Kamimura; J M Rini; A T Profy; I A Wilson
Journal:  Structure       Date:  1993-10-15       Impact factor: 5.006

10.  A role for surface hydrophobicity in protein-protein recognition.

Authors:  L Young; R L Jernigan; D G Covell
Journal:  Protein Sci       Date:  1994-05       Impact factor: 6.725

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  765 in total

1.  Calculation of weak protein-protein interactions: the pH dependence of the second virial coefficient.

Authors:  A H Elcock; J A McCammon
Journal:  Biophys J       Date:  2001-02       Impact factor: 4.033

2.  Chemical characteristics of dimer interfaces in the legume lectin family.

Authors:  S Elgavish; B Shaanan
Journal:  Protein Sci       Date:  2001-04       Impact factor: 6.725

3.  The Hans Neurath Award lecture of The Protein Society: proteins-- a testament to physics, chemistry, and evolution.

Authors:  J M Thornton
Journal:  Protein Sci       Date:  2001-01       Impact factor: 6.725

4.  Dissection of the protein G B1 domain binding site for human IgG Fc fragment.

Authors:  D J Sloan; H W Hellinga
Journal:  Protein Sci       Date:  1999-08       Impact factor: 6.725

5.  Recombinant tobacco mosaic virus movement protein is an RNA-binding, alpha-helical membrane protein.

Authors:  L M Brill; R S Nunn; T W Kahn; M Yeager; R N Beachy
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-20       Impact factor: 11.205

6.  New structural motifs on the chymotrypsin fold and their potential roles in complement factor B.

Authors:  H Jing; Y Xu; M Carson; D Moore; K J Macon; J E Volanakis; S V Narayana
Journal:  EMBO J       Date:  2000-01-17       Impact factor: 11.598

7.  Packed protein bilayers in the 0.90 A resolution structure of a designed alpha helical bundle.

Authors:  G G Privé; D H Anderson; L Wesson; D Cascio; D Eisenberg
Journal:  Protein Sci       Date:  1999-07       Impact factor: 6.725

8.  Structure of a rat α₁-macroglobulin receptor-binding domain dimer.

Authors:  T Xiao; D L DeCamp; S R Sprang
Journal:  Protein Sci       Date:  2000-10       Impact factor: 6.725

9.  Standard atomic volumes in double-stranded DNA and packing in protein--DNA interfaces.

Authors:  K Nadassy; I Tomás-Oliveira; I Alberts; J Janin; S J Wodak
Journal:  Nucleic Acids Res       Date:  2001-08-15       Impact factor: 16.971

10.  Amino acid-base interactions: a three-dimensional analysis of protein-DNA interactions at an atomic level.

Authors:  N M Luscombe; R A Laskowski; J M Thornton
Journal:  Nucleic Acids Res       Date:  2001-07-01       Impact factor: 16.971

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