Literature DB >> 12409620

Evidence for the formation of disulfide radicals in protein crystals upon X-ray irradiation.

Martin Weik1, Jacqueline Bergès, Maria L Raves, Piet Gros, Sean McSweeney, Israel Silman, Joel L Sussman, Chantal Houée-Levin, Raimond B G Ravelli.   

Abstract

Irradiation of proteins with intense X-ray radiation produced by third-generation synchrotron sources generates specific structural and chemical alterations, including breakage of disulfide bonds and decarboxylation. In this paper, disulfide bond lengths in irradiated crystals of the enzyme Torpedo californica acetylcholinesterase are examined based on quantum simulations and on experimental data published previously. The experimental data suggest that one disulfide bond elongates by approximately 0.7 A upon X-ray irradiation as seen in a series of nine data sets collected on a single crystal. Simulation of the same bond suggests elongation by a similar value if a disulfide-radical anion is formed by trapping an electron. The absorption spectrum of a crystal irradiated under similar conditions shows a peak at approximately 400 nm, which in aqueous solution has been attributed to disulfide radicals. The results suggest that the formation of disulfide radicals in protein crystals owing to X-ray irradiation can be observed experimentally, both by structural means and by absorption spectroscopy.

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Year:  2002        PMID: 12409620     DOI: 10.1107/s0909049502014589

Source DB:  PubMed          Journal:  J Synchrotron Radiat        ISSN: 0909-0495            Impact factor:   2.616


  21 in total

1.  Synchrotron Radiation Provides a Plausible Explanation for the Generation of a Free Radical Adduct of Thioxolone in Mutant Carbonic Anhydrase II.

Authors:  Katherine H Sippel; Caroli Genis; Lakshmanan Govindasamy; Mavis Agbandje-McKenna; James J Kiddle; Brian C Tripp; Robert McKenna
Journal:  J Phys Chem Lett       Date:  2010-10-07       Impact factor: 6.475

2.  Energy dependence of site-specific radiation damage in protein crystals.

Authors:  Christina Homer; Laura Cooper; Ana Gonzalez
Journal:  J Synchrotron Radiat       Date:  2011-03-15       Impact factor: 2.616

3.  An allosteric model for control of pore opening by substrate binding in the EutL microcompartment shell protein.

Authors:  Michael C Thompson; Duilio Cascio; David J Leibly; Todd O Yeates
Journal:  Protein Sci       Date:  2015-03-31       Impact factor: 6.725

4.  Global radiation damage: temperature dependence, time dependence and how to outrun it.

Authors:  Matthew Warkentin; Jesse B Hopkins; Ryan Badeau; Anne M Mulichak; Lisa J Keefe; Robert E Thorne
Journal:  J Synchrotron Radiat       Date:  2012-11-29       Impact factor: 2.616

5.  XANES measurements of the rate of radiation damage to selenomethionine side chains.

Authors:  James M Holton
Journal:  J Synchrotron Radiat       Date:  2006-12-15       Impact factor: 2.616

6.  Cysteine dioxygenase structures from pH4 to 9: consistent cys-persulfenate formation at intermediate pH and a Cys-bound enzyme at higher pH.

Authors:  Camden M Driggers; Richard B Cooley; Banumathi Sankaran; Lawrence L Hirschberger; Martha H Stipanuk; P Andrew Karplus
Journal:  J Mol Biol       Date:  2013-06-07       Impact factor: 5.469

7.  Evaluating the impact of X-ray damage on conformational heterogeneity in room-temperature (277 K) and cryo-cooled protein crystals.

Authors:  Filip Yabukarski; Tzanko Doukov; Daniel A Mokhtari; Siyuan Du; Daniel Herschlag
Journal:  Acta Crystallogr D Struct Biol       Date:  2022-07-14       Impact factor: 5.699

8.  Radiation damage in macromolecular crystallography: what is it and why should we care?

Authors:  Elspeth F Garman
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

9.  Selective and irreversible inhibitors of mosquito acetylcholinesterases for controlling malaria and other mosquito-borne diseases.

Authors:  Yuan-Ping Pang; Fredrik Ekström; Gregory A Polsinelli; Yang Gao; Sandeep Rana; Duy H Hua; Björn Andersson; Per Ola Andersson; Lei Peng; Sanjay K Singh; Rajesh K Mishra; Kun Yan Zhu; Ann M Fallon; David W Ragsdale; Stephen Brimijoin
Journal:  PLoS One       Date:  2009-08-28       Impact factor: 3.240

Review 10.  A beginner's guide to radiation damage.

Authors:  James M Holton
Journal:  J Synchrotron Radiat       Date:  2009-02-25       Impact factor: 2.616

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