Literature DB >> 12384607

A one-step method for in vitro production of tRNA transcripts.

Dragana Korencić1, Dieter Söll, Alexandre Ambrogelly.   

Abstract

Sequencing of a large number of microbial genomes has led to the discovery of new enzymes involved in tRNA biosynthesis and tRNA function. Preparation of a great variety of RNA molecules is, therefore, of major interest for biochemical characterization of these proteins. We describe a fast, cost-effective and efficient method for in vitro production of tRNA transcripts. T7 RNA polymerase requires a double-stranded DNA promoter in order to initiate transcription; however, elongation does not require a double-stranded DNA template. A partially double-stranded transcription template formed by annealing of a short oligonucleotide, complementary to the T7 promoter, to a larger oligonucleotide is shown to be a good substrate for in vitro transcription. This method allows rapid production of a variety of tRNA transcripts which can be aminoacylated well. This eliminates the need for cloning of tRNA genes, large-scale plasmid preparation and enzymatic digestion.

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Year:  2002        PMID: 12384607      PMCID: PMC137149          DOI: 10.1093/nar/gnf104

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  23 in total

1.  Characterization of halted T7 RNA polymerase elongation complexes reveals multiple factors that contribute to stability.

Authors:  P E Mentesana; S T Chin-Bow; R Sousa; W T McAllister
Journal:  J Mol Biol       Date:  2000-10-06       Impact factor: 5.469

2.  Studies of promoter recognition and start site selection by T7 RNA polymerase using a comprehensive collection of promoter variants.

Authors:  D Imburgio; M Rong; K Ma; W T McAllister
Journal:  Biochemistry       Date:  2000-08-29       Impact factor: 3.162

3.  Nucleotides in yeast tRNAPhe required for the specific recognition by its cognate synthetase.

Authors:  J R Sampson; A B DiRenzo; L S Behlen; O C Uhlenbeck
Journal:  Science       Date:  1989-03-10       Impact factor: 47.728

4.  SP6 RNA polymerase efficiently synthesizes RNA from short double-stranded DNA templates.

Authors:  W T Stump; K B Hall
Journal:  Nucleic Acids Res       Date:  1993-11-25       Impact factor: 16.971

5.  Synthesis of small RNAs using T7 RNA polymerase.

Authors:  J F Milligan; O C Uhlenbeck
Journal:  Methods Enzymol       Date:  1989       Impact factor: 1.600

6.  Biochemical and physical characterization of an unmodified yeast phenylalanine transfer RNA transcribed in vitro.

Authors:  J R Sampson; O C Uhlenbeck
Journal:  Proc Natl Acad Sci U S A       Date:  1988-02       Impact factor: 11.205

7.  Methanococcus jannaschii prolyl-cysteinyl-tRNA synthetase possesses overlapping amino acid binding sites.

Authors:  C Stathopoulos; C Jacquin-Becker; H D Becker; T Li; A Ambrogelly; R Longman; D Söll
Journal:  Biochemistry       Date:  2001-01-09       Impact factor: 3.162

8.  Structure of a transcribing T7 RNA polymerase initiation complex.

Authors:  G M Cheetham; T A Steitz
Journal:  Science       Date:  1999-12-17       Impact factor: 47.728

9.  Uniform binding of aminoacyl-tRNAs to elongation factor Tu by thermodynamic compensation.

Authors:  F J LaRiviere; A D Wolfson; O C Uhlenbeck
Journal:  Science       Date:  2001-10-05       Impact factor: 47.728

10.  Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates.

Authors:  J F Milligan; D R Groebe; G W Witherell; O C Uhlenbeck
Journal:  Nucleic Acids Res       Date:  1987-11-11       Impact factor: 16.971

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  12 in total

1.  Atypical archaeal tRNA pyrrolysine transcript behaves towards EF-Tu as a typical elongator tRNA.

Authors:  Anne Théobald-Dietrich; Magali Frugier; Richard Giegé; Joëlle Rudinger-Thirion
Journal:  Nucleic Acids Res       Date:  2004-02-10       Impact factor: 16.971

2.  Designing seryl-tRNA synthetase for improved serylation of selenocysteine tRNAs.

Authors:  Xian Fu; Ana Crnković; Anastasia Sevostyanova; Dieter Söll
Journal:  FEBS Lett       Date:  2018-10-24       Impact factor: 4.124

Review 3.  Biochemistry of Aminoacyl tRNA Synthetase and tRNAs and Their Engineering for Cell-Free and Synthetic Cell Applications.

Authors:  Ragunathan Bava Ganesh; Sebastian J Maerkl
Journal:  Front Bioeng Biotechnol       Date:  2022-07-01

Review 4.  Codon-Reduced Protein Synthesis With Manipulating tRNA Components in Cell-Free System.

Authors:  Jiaojiao Li; Mengtong Tang; Hao Qi
Journal:  Front Bioeng Biotechnol       Date:  2022-05-13

5.  Trypanosoma brucei RNA editing: coupled cycles of U deletion reveal processive activity of the editing complex.

Authors:  Vadim S Alatortsev; Jorge Cruz-Reyes; Alevtina G Zhelonkina; Barbara Sollner-Webb
Journal:  Mol Cell Biol       Date:  2008-01-28       Impact factor: 4.272

6.  Current awareness on comparative and functional genomics.

Authors: 
Journal:  Comp Funct Genomics       Date:  2003

7.  Accurate RNA consensus sequencing for high-fidelity detection of transcriptional mutagenesis-induced epimutations.

Authors:  Kate S Reid-Bayliss; Lawrence A Loeb
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-10       Impact factor: 11.205

8.  Molecular mechanism of substrate recognition and specificity of tRNAHis guanylyltransferase during nucleotide addition in the 3'-5' direction.

Authors:  Akiyoshi Nakamura; Daole Wang; Yasuo Komatsu
Journal:  RNA       Date:  2018-08-15       Impact factor: 4.942

9.  Overexpression of human mitochondrial valyl tRNA synthetase can partially restore levels of cognate mt-tRNAVal carrying the pathogenic C25U mutation.

Authors:  Joanna Rorbach; Abdul Aziz Yusoff; Helen Tuppen; Dyg P Abg-Kamaludin; Zofia M A Chrzanowska-Lightowlers; Robert W Taylor; Douglass M Turnbull; Robert McFarland; Robert N Lightowlers
Journal:  Nucleic Acids Res       Date:  2008-04-08       Impact factor: 16.971

10.  Rationally evolving tRNAPyl for efficient incorporation of noncanonical amino acids.

Authors:  Chenguang Fan; Hai Xiong; Noah M Reynolds; Dieter Söll
Journal:  Nucleic Acids Res       Date:  2015-08-06       Impact factor: 16.971

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