Literature DB >> 14872064

Atypical archaeal tRNA pyrrolysine transcript behaves towards EF-Tu as a typical elongator tRNA.

Anne Théobald-Dietrich1, Magali Frugier, Richard Giegé, Joëlle Rudinger-Thirion.   

Abstract

The newly discovered tRNA(Pyl) is involved in specific incorporation of pyrrolysine in the active site of methylamine methyltransferases in the archaeon Methanosarcina barkeri. In solution probing experiments, a transcript derived from tRNA(Pyl) displays a secondary fold slightly different from the canonical cloverleaf and interestingly similar to that of bovine mitochondrial tRNA(Ser)(uga). Aminoacylation of tRNA(Pyl) transcript by a typical class II synthetase, LysRS from yeast, was possible when its amber anticodon CUA was mutated into a lysine UUU anticodon. Hydrolysis protection assays show that lysylated tRNA(Pyl) can be recognized by bacterial elongation factor. This indicates that no antideterminant sequence is present in the body of the tRNA(Pyl) transcript to prevent it from interacting with EF-Tu, in contrast with the otherwise functionally similar tRNA(Sec) that mediates selenocysteine incorporation.

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Year:  2004        PMID: 14872064      PMCID: PMC373401          DOI: 10.1093/nar/gkh266

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  41 in total

1.  Identity of prokaryotic and eukaryotic tRNA(Asp) for aminoacylation by aspartyl-tRNA synthetase from Thermus thermophilus.

Authors:  H D Becker; R Giegé; D Kern
Journal:  Biochemistry       Date:  1996-06-11       Impact factor: 3.162

2.  Mirror image alternative interaction patterns of the same tRNA with either class I arginyl-tRNA synthetase or class II aspartyl-tRNA synthetase.

Authors:  M Sissler; G Eriani; F Martin; R Giegé; C Florentz
Journal:  Nucleic Acids Res       Date:  1997-12-15       Impact factor: 16.971

3.  Compilation of tRNA sequences and sequences of tRNA genes.

Authors:  M Sprinzl; C Horn; M Brown; A Ioudovitch; S Steinberg
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

4.  Minimalist aminoacylated RNAs as efficient substrates for elongation factor Tu.

Authors:  J Rudinger; B Blechschmidt; S Ribeiro; M Sprinzl
Journal:  Biochemistry       Date:  1994-05-17       Impact factor: 3.162

5.  Clustered genes encoding the methyltransferases of methanogenesis from monomethylamine.

Authors:  S A Burke; S L Lo; J A Krzycki
Journal:  J Bacteriol       Date:  1998-07       Impact factor: 3.490

6.  Antideterminants present in minihelix(Sec) hinder its recognition by prokaryotic elongation factor Tu.

Authors:  J Rudinger; R Hillenbrandt; M Sprinzl; R Giegé
Journal:  EMBO J       Date:  1996-02-01       Impact factor: 11.598

7.  Higher-order structure and thermal instability of bovine mitochondrial tRNASerUGA investigated by proton NMR spectroscopy.

Authors:  I Hayashi; G Kawai; K Watanabe
Journal:  J Mol Biol       Date:  1998-11-20       Impact factor: 5.469

8.  Defining a smaller RNA substrate for elongation factor Tu.

Authors:  I A Nazarenko; O C Uhlenbeck
Journal:  Biochemistry       Date:  1995-02-28       Impact factor: 3.162

9.  Crystal structure of the ternary complex of Phe-tRNAPhe, EF-Tu, and a GTP analog.

Authors:  P Nissen; M Kjeldgaard; S Thirup; G Polekhina; L Reshetnikova; B F Clark; J Nyborg
Journal:  Science       Date:  1995-12-01       Impact factor: 47.728

10.  Many of the conserved nucleotides of tRNA(Phe) are not essential for ternary complex formation and peptide elongation.

Authors:  I A Nazarenko; K M Harrington; O C Uhlenbeck
Journal:  EMBO J       Date:  1994-05-15       Impact factor: 11.598

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  23 in total

1.  A natural genetic code expansion cassette enables transmissible biosynthesis and genetic encoding of pyrrolysine.

Authors:  David G Longstaff; Ross C Larue; Joseph E Faust; Anirban Mahapatra; Liwen Zhang; Kari B Green-Church; Joseph A Krzycki
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-04       Impact factor: 11.205

2.  Dynamics of Recognition between tRNA and elongation factor Tu.

Authors:  John Eargle; Alexis A Black; Anurag Sethi; Leonardo G Trabuco; Zaida Luthey-Schulten
Journal:  J Mol Biol       Date:  2008-02-04       Impact factor: 5.469

Review 3.  Emergence and evolution.

Authors:  Tammy J Bullwinkle; Michael Ibba
Journal:  Top Curr Chem       Date:  2014

Review 4.  tRNAPyl: Structure, function, and applications.

Authors:  Jeffery M Tharp; Andreas Ehnbom; Wenshe R Liu
Journal:  RNA Biol       Date:  2017-09-13       Impact factor: 4.652

Review 5.  Functional context, biosynthesis, and genetic encoding of pyrrolysine.

Authors:  Marsha A Gaston; Ruisheng Jiang; Joseph A Krzycki
Journal:  Curr Opin Microbiol       Date:  2011-05-05       Impact factor: 7.934

6.  Noncanonical secondary structure stabilizes mitochondrial tRNA(Ser(UCN)) by reducing the entropic cost of tertiary folding.

Authors:  Anthony M Mustoe; Xin Liu; Paul J Lin; Hashim M Al-Hashimi; Carol A Fierke; Charles L Brooks
Journal:  J Am Chem Soc       Date:  2015-03-09       Impact factor: 15.419

7.  Engineering aminoacyl-tRNA synthetases for use in synthetic biology.

Authors:  Natalie Krahn; Jeffery M Tharp; Ana Crnković; Dieter Söll
Journal:  Enzymes       Date:  2020-09-08

8.  Near-cognate suppression of amber, opal and quadruplet codons competes with aminoacyl-tRNAPyl for genetic code expansion.

Authors:  Patrick O'Donoghue; Laure Prat; Ilka U Heinemann; Jiqiang Ling; Keturah Odoi; Wenshe R Liu; Dieter Söll
Journal:  FEBS Lett       Date:  2012-10-01       Impact factor: 4.124

Review 9.  Selenocysteine, pyrrolysine, and the unique energy metabolism of methanogenic archaea.

Authors:  Michael Rother; Joseph A Krzycki
Journal:  Archaea       Date:  2010-08-17       Impact factor: 3.273

10.  Pyrrolysine is not hardwired for cotranslational insertion at UAG codons.

Authors:  Alexandre Ambrogelly; Sarath Gundllapalli; Stephanie Herring; Carla Polycarpo; Carina Frauer; Dieter Söll
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-20       Impact factor: 11.205

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