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Literature DB >> 12228008

Increased taxon sampling is advantageous for phylogenetic inference.

David D Pollock¹, Derrick J Zwickl, Jimmy A McGuire, David M Hillis.

Abstract

Mesh：

Year: 2002 PMID： 12228008 PMCID： PMC2943957 DOI： 10.1080/10635150290102357

Source DB: PubMed Journal: Syst Biol ISSN： 1063-5157 Impact factor: 15.683

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23 in total

1. The phylogeny of land plants inferred from 18S rDNA sequences: pushing the limits of rDNA signal?

Authors: P S Soltis; D E Soltis; P G Wolf; D L Nickrent; S M Chaw; R L Chapman
Journal: Mol Biol Evol Date: 1999-12 Impact factor: 16.240

2. EDIBLE: experimental design and information calculations in phylogenetics.

Authors: T Massingham; N Goldman
Journal: Bioinformatics Date: 2000-03 Impact factor: 6.937

Review 3. A case for evolutionary genomics and the comprehensive examination of sequence biodiversity.

Authors: D D Pollock; J A Eisen; N A Doggett; M P Cummings
Journal: Mol Biol Evol Date: 2000-12 Impact factor: 16.240

4. Assessing an unknown evolutionary process: effect of increasing site-specific knowledge through taxon addition.

Authors: D D Pollock; W J Bruno
Journal: Mol Biol Evol Date: 2000-12 Impact factor: 16.240

5. Taxon sampling revisited.

Authors: S Poe; D L Swofford
Journal: Nature Date: 1999-03-25 Impact factor: 49.962

6. Incomplete taxon sampling is not a problem for phylogenetic inference.

Authors: M S Rosenberg; S Kumar
Journal: Proc Natl Acad Sci U S A Date: 2001-08-28 Impact factor: 11.205

7. On the consistency of maximum likelihood estimation of phylogenetic trees from nucleotide sequences.

Authors: J S Rogers
Journal: Syst Biol Date: 1997-06 Impact factor: 15.683

8. Topological bias and inconsistency of maximum likelihood using wrong models.

Authors: W J Bruno; A L Halpern
Journal: Mol Biol Evol Date: 1999-04 Impact factor: 16.240

9. On the best evolutionary rate for phylogenetic analysis.

Authors: Z Yang
Journal: Syst Biol Date: 1998-03 Impact factor: 15.683

10. Molecular phylogenetics and the origins of placental mammals.

Authors: W J Murphy; E Eizirik; W E Johnson; Y P Zhang; O A Ryder; S J O'Brien
Journal: Nature Date: 2001-02-01 Impact factor: 49.962

83 in total

1. Is sparse taxon sampling a problem for phylogenetic inference?

Authors: David M Hillis; David D Pollock; Jimmy A McGuire; Derrick J Zwickl
Journal: Syst Biol Date: 2003-02 Impact factor: 15.683

2. Taxon sampling, bioinformatics, and phylogenomics.

Authors: Michael S Rosenberg; Sudhir Kumar
Journal: Syst Biol Date: 2003-02 Impact factor: 15.683

3. Dispersal and phylogenetic diversity of nonmarine picocyanobacteria, inferred from 16S rRNA gene and cpcBA-intergenic spacer sequence analyses.

Authors: Nicholas D Crosbie; Matthias Pöckl; Thomas Weisse
Journal: Appl Environ Microbiol Date: 2003-09 Impact factor: 4.792

4. Multiple, recurring origins of aposematism and diet specialization in poison frogs.

Authors: Juan Carlos Santos; Luis A Coloma; David C Cannatella
Journal: Proc Natl Acad Sci U S A Date: 2003-10-10 Impact factor: 11.205

Review 5. Genomic biodiversity, phylogenetics and coevolution in proteins.

Authors: David D Pollock
Journal: Appl Bioinformatics Date: 2002

6. Tangled in a sparse spider web: single origin of orb weavers and their spinning work unravelled by denser taxonomic sampling.

Authors: Dimitar Dimitrov; Lara Lopardo; Gonzalo Giribet; Miquel A Arnedo; Fernando Alvarez-Padilla; Gustavo Hormiga
Journal: Proc Biol Sci Date: 2011-11-02 Impact factor: 5.349

10. The effect of branch lengths on phylogeny: an empirical study using highly conserved orthologs from mammalian genomes.

Authors: Austin L Hughes; Robert Friedman
Journal: Mol Phylogenet Evol Date: 2007-05-18 Impact factor: 4.286