Literature DB >> 12957969

Dispersal and phylogenetic diversity of nonmarine picocyanobacteria, inferred from 16S rRNA gene and cpcBA-intergenic spacer sequence analyses.

Nicholas D Crosbie1, Matthias Pöckl, Thomas Weisse.   

Abstract

More than 20 Synechococcus and Cyanobium isolates were obtained from central European subalpine lakes and sequenced for their 16S rRNA gene and part of the phycocyanin operon (cpc), specifically the intergenic spacer (IGS) between cpcB and cpcA, and corresponding flanking regions (cpcBA-IGS). Maximum-likelihood analyses revealed the existence of at least six to seven clusters of nonmarine picocyanobacteria within the picophytoplankton clade and support the conjecture of global dispersal for some closely related picocyanobacterial genotypes.

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Year:  2003        PMID： 12957969      PMCID： PMC194977          DOI： 10.1128/AEM.69.9.5716-5721.2003

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  27 in total

1.  Comparative sequence analyses reveal frequent occurrence of short segments containing an abnormally high number of non-random base variations in bacterial rRNA genes.

Authors:  Y Wang; Z Zhang
Journal:  Microbiology       Date:  2000-11       Impact factor: 2.777

2.  Phylogenetic analyses of Synechococcus strains (cyanobacteria) using sequences of 16S rDNA and part of the phycocyanin operon reveal multiple evolutionary lines and reflect phycobilin content.

Authors:  B R Robertson; N Tezuka; M M Watanabe
Journal:  Int J Syst Evol Microbiol       Date:  2001-05       Impact factor: 2.747

3.  Resolution of Prochlorococcus and Synechococcus ecotypes by using 16S-23S ribosomal DNA internal transcribed spacer sequences.

Authors:  Gabrielle Rocap; Daniel L Distel; John B Waterbury; Sallie W Chisholm
Journal:  Appl Environ Microbiol       Date:  2002-03       Impact factor: 4.792

4.  Global dispersal of free-living microbial eukaryote species.

Authors:  Bland J Finlay
Journal:  Science       Date:  2002-05-10       Impact factor: 47.728

5.  Evaluation of methods for detecting recombination from DNA sequences: empirical data.

Authors:  David Posada
Journal:  Mol Biol Evol       Date:  2002-05       Impact factor: 16.240

6.  Detection of seven major evolutionary lineages in cyanobacteria based on the 16S rRNA gene sequence analysis with new sequences of five marine Synechococcus strains.

Authors:  D Honda; A Yokota; J Sugiyama
Journal:  J Mol Evol       Date:  1999-06       Impact factor: 2.395

Review 7.  Bacterial species and speciation.

Authors:  F M Cohan
Journal:  Syst Biol       Date:  2001-08       Impact factor: 15.683

8.  Use of subtractive hybridization for comprehensive surveys of prokaryotic genome differences.

Authors:  Peter G Agron; Madison Macht; Lyndsay Radnedge; Evan W Skowronski; Webb Miller; Gary L Andersen
Journal:  FEMS Microbiol Lett       Date:  2002-06-04       Impact factor: 2.742

9.  The cpcB-cpcA locus as a tool for the genetic characterization of the genus Arthrospira (Cyanobacteria): evidence for horizontal transfer.

Authors:  Jean-François Manen; Jacques Falquet
Journal:  Int J Syst Evol Microbiol       Date:  2002-05       Impact factor: 2.747

10.  Protein-coding genes as molecular markers for ecologically distinct populations: the case of two Bacillus species.

Authors:  T Palys; E Berger; I Mitrica; L K Nakamura; F M Cohan
Journal:  Int J Syst Evol Microbiol       Date:  2000-05       Impact factor: 2.747
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  28 in total

1.  Cyanophage diversity, inferred from g20 gene analyses, in the largest natural lake in France, Lake Bourget.

Authors:  Ursula Dorigo; Stéphan Jacquet; Jean-François Humbert
Journal:  Appl Environ Microbiol       Date:  2004-02       Impact factor: 4.792

2.  Nitrate and phosphate affect cultivability of cyanobacteria from environments with low nutrient levels.

Authors:  Anneliese Ernst; Manfred Deicher; Peter M J Herman; Ute I A Wollenzien
Journal:  Appl Environ Microbiol       Date:  2005-06       Impact factor: 4.792

3.  Low intraspecific diversity in a polynucleobacter subcluster population numerically dominating bacterioplankton of a freshwater pond.

Authors:  Martin W Hahn; Matthias Pöckl; Qinglong L Wu
Journal:  Appl Environ Microbiol       Date:  2005-08       Impact factor: 4.792

4.  Determination of cyanobacterial diversity during algal blooms in Daechung Reservoir, Korea, on the basis of cpcBA intergenic spacer region analysis.

Authors:  Song-Gun Kim; Sung-Keun Rhee; Chi-Yong Ahn; So-Ra Ko; Gang-Guk Choi; Jin-Woo Bae; Yong-Ha Park; Hee-Mock Oh
Journal:  Appl Environ Microbiol       Date:  2006-05       Impact factor: 4.792

5.  Diverse and unique picocyanobacteria in Chesapeake Bay, revealed by 16S-23S rRNA internal transcribed spacer sequences.

Authors:  Feng Chen; Kui Wang; Jinjun Kan; Marcelino T Suzuki; K Eric Wommack
Journal:  Appl Environ Microbiol       Date:  2006-03       Impact factor: 4.792

6.  Lake Superior supports novel clusters of cyanobacterial picoplankton.

Authors:  Natalia V Ivanikova; Linda C Popels; R Michael L McKay; George S Bullerjahn
Journal:  Appl Environ Microbiol       Date:  2007-04-27       Impact factor: 4.792

7.  Influence of the Changjiang River flood on Synechococcus ecology in the surface waters of the East China Sea.

Authors:  Chih-Ching Chung; Chin-Yi Huang; Gwo-Ching Gong; Yun-Chi Lin
Journal:  Microb Ecol       Date:  2013-10-06       Impact factor: 4.552

8.  East Tibetan lakes harbour novel clusters of picocyanobacteria as inferred from the 16S-23S rRNA internal transcribed spacer sequences.

Authors:  Qinglong L Wu; Peng Xing; Wen-Tso Liu
Journal:  Microb Ecol       Date:  2009-11-12       Impact factor: 4.552

9.  Microcolony formation by single-cell Synechococcus strains as a fast response to UV radiation.

Authors:  Cristiana Callieri; Andrea Lami; Roberto Bertoni
Journal:  Appl Environ Microbiol       Date:  2011-09-02       Impact factor: 4.792

10.  Photosynthetic and growth response of freshwater picocyanobacteria are strain-specific and sensitive to photoacclimation.

Authors:  Michael Moser; Cristana Callieri; Thomas Weisse
Journal:  J Plankton Res       Date:  2008-12-26       Impact factor: 2.455
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