Literature DB >> 12202373

Geometry and intrinsic tilt of a tryptophan-anchored transmembrane alpha-helix determined by (2)H NMR.

Patrick C A van der Wel1, Erik Strandberg, J Antoinette Killian, Roger E Koeppe.   

Abstract

We used solid-state deuterium NMR spectroscopy and an approach involving geometric analysis of labeled alanines (GALA method) to examine the structure and orientation of a designed synthetic hydrophobic, membrane-spanning alpha-helical peptide in phosphatidylcholine (PC) bilayers. The 19-amino-acid peptide consists of an alternating leucine and alanine core, flanked by tryptophans that serve as interfacial anchors: acetyl-GWW(LA)(6)LWWA-ethanolamine (WALP19). A single deuterium-labeled alanine was introduced at different positions within the peptide. Peptides were incorporated in oriented bilayers of dilauroyl- (di-C12:0-), dimyristoyl- (di-C14:0-), or dioleoyl- (di-C18:1(c)-) phosphatidylcholine. The NMR data fit well to a WALP19 orientation characterized by a distinctly nonzero tilt, approximately 4 degrees from the membrane normal, and rapid reorientation about the membrane normal in all three lipids. Although the orientation of WALP19 varies slightly in the different lipids, hydrophobic mismatch does not seem to be the dominant factor causing the tilt. We suggest rather that the peptide itself has an inherently preferred tilted orientation, possibly related to peptide surface characteristics or the disposition of tryptophan indole anchors relative to the lipids, the peptide backbone, and the membrane/water interface. Additionally, the data allow us to define more precisely the local alanine geometry in this membrane-spanning alpha-helix.

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Year:  2002        PMID: 12202373      PMCID: PMC1302246          DOI: 10.1016/S0006-3495(02)73918-0

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  35 in total

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5.  Peptide models of the helical hydrophobic transmembrane segments of membrane proteins: interactions of acetyl-K2-(LA)12-K2-amide with phosphatidylethanolamine bilayer membranes.

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Journal:  Biochemistry       Date:  2001-01-16       Impact factor: 3.162

6.  Deuterium NMR of Val1...(2-2H)Ala3...gramicidin A in oriented DMPC bilayers.

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Authors:  A R Jude; D V Greathouse; M C Leister; R E Koeppe
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8.  Molecular ordering of interfacially localized tryptophan analogs in ester- and ether-lipid bilayers studied by 2H-NMR.

Authors:  S Persson; J A Killian; G Lindblom
Journal:  Biophys J       Date:  1998-09       Impact factor: 4.033

9.  The fluid mosaic model of the structure of cell membranes.

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10.  Side-chain structure and dynamics at the lipid-protein interface: Val1 of the gramicidin A channel.

Authors:  K C Lee; T A Cross
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  77 in total

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5.  Order parameters of a transmembrane helix in a fluid bilayer: case study of a WALP peptide.

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8.  2H-NMR study and molecular dynamics simulation of the location, alignment, and mobility of pyrene in POPC bilayers.

Authors:  Barbara Hoff; Erik Strandberg; Anne S Ulrich; D Peter Tieleman; Clemens Posten
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9.  Accommodation of a central arginine in a transmembrane peptide by changing the placement of anchor residues.

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10.  Molecular dynamics simulation of transmembrane polypeptide orientational fluctuations.

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