Literature DB >> 12198486

Cellvibrio japonicus alpha-L-arabinanase 43A has a novel five-blade beta-propeller fold.

Didier Nurizzo1, Johan P Turkenburg, Simon J Charnock, Shirley M Roberts, Eleanor J Dodson, Vincent A McKie, Edward J Taylor, Harry J Gilbert, Gideon J Davies.   

Abstract

Cellvibrio japonicus arabinanase Arb43A hydrolyzes the alpha-1,5-linked L-arabinofuranoside backbone of plant cell wall arabinans. The three-dimensional structure of Arb43A, determined at 1.9 A resolution, reveals a five-bladed beta-propeller fold. Arb43A is the first enzyme known to display this topology. A long V-shaped surface groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. Three carboxylates deep in the active site groove provide the general acid and base components for glycosidic bond hydrolysis with inversion of anomeric configuration.

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Year:  2002        PMID: 12198486     DOI: 10.1038/nsb835

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN: 1072-8368


  52 in total

1.  Structures of endo-1,5-α-L-arabinanase mutants from Bacillus thermodenitrificans TS-3 in complex with arabino-oligosaccharides.

Authors:  Asako Yamaguchi; Yuri Sogabe; Satomi Fukuoka; Takuo Sakai; Toshiji Tada
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2018-11-26       Impact factor: 1.056

2.  Domain analysis of a modular alpha-L-Arabinofuranosidase with a unique carbohydrate binding strategy from the fiber-degrading bacterium Fibrobacter succinogenes S85.

Authors:  Shosuke Yoshida; Charles W Hespen; Robert L Beverly; Roderick I Mackie; Isaac K O Cann
Journal:  J Bacteriol       Date:  2010-08-13       Impact factor: 3.490

3.  Functional association of catalytic and ancillary modules dictates enzymatic activity in glycoside hydrolase family 43 β-xylosidase.

Authors:  Sarah Moraïs; Orly Salama-Alber; Yoav Barak; Yitzhak Hadar; David B Wilson; Raphael Lamed; Yuval Shoham; Edward A Bayer
Journal:  J Biol Chem       Date:  2012-01-23       Impact factor: 5.157

4.  Crystallization and preliminary X-ray analysis of an arabinoxylan arabinofuranohydrolase from Bacillus subtilis.

Authors:  Elien Vandermarliere; Tine M Bourgois; Steven Van Campenhout; Sergei V Strelkov; Guido Volckaert; Jan A Delcour; Christophe M Courtin; Anja Rabijns
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-07-21

5.  Metabolic mechanism of mannan in a ruminal bacterium, Ruminococcus albus, involving two mannoside phosphorylases and cellobiose 2-epimerase: discovery of a new carbohydrate phosphorylase, β-1,4-mannooligosaccharide phosphorylase.

Authors:  Ryosuke Kawahara; Wataru Saburi; Rei Odaka; Hidenori Taguchi; Shigeaki Ito; Haruhide Mori; Hirokazu Matsui
Journal:  J Biol Chem       Date:  2012-10-23       Impact factor: 5.157

6.  Unraveling the difference between invertases and fructan exohydrolases: a single amino acid (Asp-239) substitution transforms Arabidopsis cell wall invertase1 into a fructan 1-exohydrolase.

Authors:  Katrien Le Roy; Willem Lammens; Maureen Verhaest; Barbara De Coninck; Anja Rabijns; André Van Laere; Wim Van den Ende
Journal:  Plant Physiol       Date:  2007-09-14       Impact factor: 8.340

7.  Novel Trifunctional Xylanolytic Enzyme Axy43A from Paenibacillus curdlanolyticus Strain B-6 Exhibiting Endo-Xylanase, β-d-Xylosidase, and Arabinoxylan Arabinofuranohydrolase Activities.

Authors:  Thitiporn Teeravivattanakit; Sirilak Baramee; Paripok Phitsuwan; Rattiya Waeonukul; Patthra Pason; Chakrit Tachaapaikoon; Kazuo Sakka; Khanok Ratanakhanokchai
Journal:  Appl Environ Microbiol       Date:  2016-09-23       Impact factor: 4.792

8.  Identification of Uncharacterized Components of Prokaryotic Immune Systems and Their Diverse Eukaryotic Reformulations.

Authors:  A Maxwell Burroughs; L Aravind
Journal:  J Bacteriol       Date:  2020-11-19       Impact factor: 3.490

9.  Crystallization and preliminary crystallographic analysis of exo-alpha-1,5-L-arabinofuranosidase from Streptomyces avermitilis NBRC14893.

Authors:  Zui Fujimoto; Hitomi Ichinose; Satoshi Kaneko
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-10-25

10.  Delineating thermophilic xylanase from Bacillus licheniformis DM5 towards its potential application in xylooligosaccharides production.

Authors:  Arabinda Ghosh; Saikat Sutradhar; Debabrat Baishya
Journal:  World J Microbiol Biotechnol       Date:  2019-01-31       Impact factor: 3.312

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