Literature DB >> 22270362

Functional association of catalytic and ancillary modules dictates enzymatic activity in glycoside hydrolase family 43 β-xylosidase.

Sarah Moraïs1, Orly Salama-Alber, Yoav Barak, Yitzhak Hadar, David B Wilson, Raphael Lamed, Yuval Shoham, Edward A Bayer.   

Abstract

β-Xylosidases are hemicellulases that hydrolyze short xylo-oligosaccharides into xylose units, thus complementing endoxylanase degradation of the hemicellulose component of lignocellulosic substrates. Here, we describe the cloning, characterization, and kinetic analysis of a glycoside hydrolase family 43 β-xylosidase (Xyl43A) from the aerobic cellulolytic bacterium, Thermobifida fusca. Temperature and pH optima of 55-60 °C and 5.5-6, respectively, were determined. The apparent K(m) value was 0.55 mM, using p-nitrophenyl xylopyranoside as substrate, and the catalytic constant (k(cat)) was 6.72 s(-1). T. fusca Xyl43A contains a catalytic module at the N terminus and an ancillary module (termed herein as Module-A) of undefined function at the C terminus. We expressed the two recombinant modules independently in Escherichia coli and examined their remaining catalytic activity and binding properties. The separation of the two Xyl43A modules caused the complete loss of enzymatic activity, whereas potent binding to xylan was fully maintained in the catalytic module and partially in the ancillary Module-A. Nondenaturing gel electrophoresis revealed a specific noncovalent coupling of the two modules, thereby restoring enzymatic activity to 66.7% (relative to the wild-type enzyme). Module-A contributes a phenylalanine residue that functions as an essential part of the active site, and the two juxtaposed modules function as a single functional entity.

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Year:  2012        PMID: 22270362      PMCID: PMC3308730          DOI: 10.1074/jbc.M111.314286

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  41 in total

1.  ON THE ENZYMIC ACTIVITY OF SUBTILISIN-MODIFIED RIBONUCLEASE.

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Authors:  Tal Burstein; Michal Shulman; Sadanari Jindou; Svetlana Petkun; Felix Frolow; Yuval Shoham; Edward A Bayer; Raphael Lamed
Journal:  FEBS Lett       Date:  2009-02-12       Impact factor: 4.124

3.  Sequencing and expression of the Butyrivibrio fibrisolvens xylB gene encoding a novel bifunctional protein with beta-D-xylosidase and alpha-L-arabinofuranosidase activities.

Authors:  E A Utt; C K Eddy; K F Keshav; L O Ingram
Journal:  Appl Environ Microbiol       Date:  1991-04       Impact factor: 4.792

4.  Cloning, expression in Streptomyces lividans and biochemical characterization of a thermostable endo-beta-1,4-xylanase of Thermomonospora alba ULJB1 with cellulose-binding ability.

Authors:  J Blanco; J J Coque; J Velasco; J F Martín
Journal:  Appl Microbiol Biotechnol       Date:  1997-08       Impact factor: 4.813

5.  Purification, characterization and functional analysis of an endo-arabinanase (AbnA) from Bacillus subtilis.

Authors:  Teresa Fontes Leal; Isabel de Sá-Nogueira
Journal:  FEMS Microbiol Lett       Date:  2004-12-01       Impact factor: 2.742

6.  Biochemical characterization and identification of the catalytic residues of a family 43 beta-D-xylosidase from Geobacillus stearothermophilus T-6.

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Journal:  Biochemistry       Date:  2005-01-11       Impact factor: 3.162

7.  Studies of Thermobifida fusca plant cell wall degrading enzymes.

Authors:  David B Wilson
Journal:  Chem Rec       Date:  2004       Impact factor: 6.771

8.  Structure of the two-subsite beta-d-xylosidase from Selenomonas ruminantium in complex with 1,3-bis[tris(hydroxymethyl)methylamino]propane.

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Journal:  Arch Biochem Biophys       Date:  2008-03-14       Impact factor: 4.013

9.  Variation in relative substrate specificity of bifunctional beta-D-xylosidase/alpha-L-arabinofuranosidase by single-site mutations: roles of substrate distortion and recognition.

Authors:  Douglas B Jordan; Xin-Liang Li
Journal:  Biochim Biophys Acta       Date:  2007-07-06

10.  Cellvibrio japonicus alpha-L-arabinanase 43A has a novel five-blade beta-propeller fold.

Authors:  Didier Nurizzo; Johan P Turkenburg; Simon J Charnock; Shirley M Roberts; Eleanor J Dodson; Vincent A McKie; Edward J Taylor; Harry J Gilbert; Gideon J Davies
Journal:  Nat Struct Biol       Date:  2002-09
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2.  Purification and characterization of a recombinant β-D-xylosidase from Thermobifida fusca TM51.

Authors:  Csaba Attila Fekete; László Kiss
Journal:  Protein J       Date:  2012-12       Impact factor: 2.371

3.  The importance of the Abn2 calcium cluster in the endo-1,5-arabinanase activity from Bacillus subtilis.

Authors:  C E McVey; M J Ferreira; B Correia; S Lahiri; D de Sanctis; Maria Arménia Carrondo; P F Lindley; Isabel de Sá Nogueira; Cláudio Manuel Soares; Isabel Bento
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4.  Deconstruction of lignocellulose into soluble sugars by native and designer cellulosomes.

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5.  Determination of glycoside hydrolase specificities during hydrolysis of plant cell walls using glycome profiling.

Authors:  Johnnie A Walker; Sivakumar Pattathil; Lai F Bergeman; Emily T Beebe; Kai Deng; Maryam Mirzai; Trent R Northen; Michael G Hahn; Brian G Fox
Journal:  Biotechnol Biofuels       Date:  2017-02-02       Impact factor: 6.040

Review 6.  β-Xylosidases: Structural Diversity, Catalytic Mechanism, and Inhibition by Monosaccharides.

Authors:  Ali Rohman; Bauke W Dijkstra; Ni Nyoman Tri Puspaningsih
Journal:  Int J Mol Sci       Date:  2019-11-06       Impact factor: 5.923

7.  Reassembly and co-crystallization of a family 9 processive endoglucanase from its component parts: structural and functional significance of the intermodular linker.

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Journal:  PeerJ       Date:  2015-09-15       Impact factor: 2.984

8.  A novel α-L-arabinofuranosidase of family 43 glycoside hydrolase (Ct43Araf) from Clostridium thermocellum.

Authors:  Shadab Ahmed; Ana Sofia Luis; Joana L A Bras; Arabinda Ghosh; Saurabh Gautam; Munishwar N Gupta; Carlos M G A Fontes; Arun Goyal
Journal:  PLoS One       Date:  2013-09-09       Impact factor: 3.240

9.  Draft Genome Sequence of the Lignocellulose Decomposer Thermobifida fusca Strain TM51.

Authors:  Akos Tóth; Terézia Barna; István Nagy; Balázs Horváth; István Nagy; András Táncsics; Balázs Kriszt; Erzsébet Baka; Csaba Fekete; József Kukolya
Journal:  Genome Announc       Date:  2013-07-11

10.  Adaptor Scaffoldins: An Original Strategy for Extended Designer Cellulosomes, Inspired from Nature.

Authors:  Johanna Stern; Sarah Moraïs; Raphael Lamed; Edward A Bayer
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  10 in total

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