Literature DB >> 17671370

Crystallization and preliminary X-ray analysis of an arabinoxylan arabinofuranohydrolase from Bacillus subtilis.

Elien Vandermarliere1, Tine M Bourgois, Steven Van Campenhout, Sergei V Strelkov, Guido Volckaert, Jan A Delcour, Christophe M Courtin, Anja Rabijns.   

Abstract

Arabinoxylan arabinofuranohydrolases (AXH) are alpha-L-arabinofuranosidases (EC 3.2.1.55) that specifically hydrolyse the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl residues from arabinoxylan, hence their name. In this study, the crystallization and preliminary X-ray analysis of the AXH from Bacillus subtilis, a glycoside hydrolase belonging to family 43, is described. Purified recombinant AXH crystallized in the orthorhombic space group P2(1)2(1)2(1), with unit-cell parameters a = 68.7, b = 73.7, c = 106.5 A. X-ray diffraction data were collected to a resolution of 1.55 A.

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Year:  2007        PMID: 17671370      PMCID: PMC2335161          DOI: 10.1107/S1744309107033702

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  12 in total

1.  The location of the ligand-binding site of carbohydrate-binding modules that have evolved from a common sequence is not conserved.

Authors:  M Czjzek; D N Bolam; A Mosbah; J Allouch; C M Fontes; L M Ferreira; O Bornet; V Zamboni; H Darbon; N L Smith; G W Black; B Henrissat; H J Gilbert
Journal:  J Biol Chem       Date:  2001-10-22       Impact factor: 5.157

2.  Tachylectin-2: crystal structure of a specific GlcNAc/GalNAc-binding lectin involved in the innate immunity host defense of the Japanese horseshoe crab Tachypleus tridentatus.

Authors:  H G Beisel; S Kawabata; S Iwanaga; R Huber; W Bode
Journal:  EMBO J       Date:  1999-05-04       Impact factor: 11.598

3.  The structure of an inverting GH43 beta-xylosidase from Geobacillus stearothermophilus with its substrate reveals the role of the three catalytic residues.

Authors:  Christian Brüx; Alon Ben-David; Dalia Shallom-Shezifi; Maya Leon; Karsten Niefind; Gil Shoham; Yuval Shoham; Dietmar Schomburg
Journal:  J Mol Biol       Date:  2006-03-20       Impact factor: 5.469

4.  Screening and optimization strategies for macromolecular crystal growth.

Authors:  R Cudney; S Patel; K Weisgraber; Y Newhouse; A McPherson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-07-01

5.  Processing of X-ray diffraction data collected in oscillation mode.

Authors:  Z Otwinowski; W Minor
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

6.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

7.  A novel type of arabinoxylan arabinofuranohydrolase isolated from germinated barley analysis of substrate preference and specificity by nano-probe NMR.

Authors:  H Ferré; A Broberg; J O Duus; K K Thomsen
Journal:  Eur J Biochem       Date:  2000-11

8.  Stereochemical course of hydrolysis catalyzed by arabinofuranosyl hydrolases.

Authors:  S M Pitson; A G Voragen; G Beldman
Journal:  FEBS Lett       Date:  1996-11-25       Impact factor: 4.124

9.  Recombinant expression and characterization of XynD from Bacillus subtilis subsp. subtilis ATCC 6051: a GH 43 arabinoxylan arabinofuranohydrolase.

Authors:  Tine M Bourgois; Valerie Van Craeyveld; Steven Van Campenhout; Christophe M Courtin; Jan A Delcour; Johan Robben; Guido Volckaert
Journal:  Appl Microbiol Biotechnol       Date:  2007-04-11       Impact factor: 4.813

10.  Cellvibrio japonicus alpha-L-arabinanase 43A has a novel five-blade beta-propeller fold.

Authors:  Didier Nurizzo; Johan P Turkenburg; Simon J Charnock; Shirley M Roberts; Eleanor J Dodson; Vincent A McKie; Edward J Taylor; Harry J Gilbert; Gideon J Davies
Journal:  Nat Struct Biol       Date:  2002-09
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  3 in total

1.  Functional association of catalytic and ancillary modules dictates enzymatic activity in glycoside hydrolase family 43 β-xylosidase.

Authors:  Sarah Moraïs; Orly Salama-Alber; Yoav Barak; Yitzhak Hadar; David B Wilson; Raphael Lamed; Yuval Shoham; Edward A Bayer
Journal:  J Biol Chem       Date:  2012-01-23       Impact factor: 5.157

2.  Crystallization of selenomethionyl exo-beta-1,3-galactanase from the basidiomycete Phanerochaete chrysosporium.

Authors:  Takuya Ishida; Zui Fujimoto; Hitomi Ichinose; Kiyohiko Igarashi; Satoshi Kaneko; Masahiro Samejima
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-11-27

3.  Crystallization and preliminary crystallographic analysis of exo-alpha-1,5-L-arabinofuranosidase from Streptomyces avermitilis NBRC14893.

Authors:  Zui Fujimoto; Hitomi Ichinose; Satoshi Kaneko
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-10-25
  3 in total

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