Literature DB >> 27663030

Novel Trifunctional Xylanolytic Enzyme Axy43A from Paenibacillus curdlanolyticus Strain B-6 Exhibiting Endo-Xylanase, β-d-Xylosidase, and Arabinoxylan Arabinofuranohydrolase Activities.

Thitiporn Teeravivattanakit1, Sirilak Baramee1, Paripok Phitsuwan1, Rattiya Waeonukul2, Patthra Pason2, Chakrit Tachaapaikoon2, Kazuo Sakka3, Khanok Ratanakhanokchai4.   

Abstract

The axy43A gene encoding the intracellular trifunctional xylanolytic enzyme from Paenibacillus curdlanolyticus B-6 was cloned and expressed in Escherichia coli Recombinant PcAxy43A consisting of a glycoside hydrolase family 43 and a family 6 carbohydrate-binding module exhibited endo-xylanase, β-xylosidase, and arabinoxylan arabinofuranohydrolase activities. PcAxy43A hydrolyzed xylohexaose and birch wood xylan to release a series of xylooligosaccharides, indicating that PcAxy43A contained endo-xylanase activity. PcAxy43A exhibited β-xylosidase activity toward a chromogenic substrate, p-nitrophenyl-β-d-xylopyranoside, and xylobiose, while it preferred to hydrolyze long-chain xylooligosaccharides rather than xylobiose. In addition, surprisingly, PcAxy43A showed arabinoxylan arabinofuranohydrolase activity; that is, it released arabinose from both singly and doubly arabinosylated xylose, α-l-Araf-(1→2)-d-Xylp or α-l-Araf-(1→3)-d-Xylp and α-l-Araf-(1→2)-[α-l-Araf-(1→3)]-β-d-Xylp Moreover, the combination of PcAxy43A and P. curdlanolyticus B-6 endo-xylanase Xyn10C greatly improved the efficiency of xylose and arabinose production from the highly substituted rye arabinoxylan, suggesting that these two enzymes function synergistically to depolymerize arabinoxylan. Therefore, PcAxy43A has the potential for the saccharification of arabinoxylan into simple sugars for many applications. IMPORTANCE In this study, the glycoside hydrolase 43 (GH43) intracellular multifunctional endo-xylanase, β-xylosidase, and arabinoxylan arabinofuranohydrolase (AXH) from P. curdlanolyticus B-6 were characterized. Interestingly, PcAxy43A AXH showed a new property that acted on both the C(O)-2 and C(O)-3 positions of xylose residues doubly substituted with arabinosyl, which usually obstruct the action of xylanolytic enzymes. Furthermore, the studies here show interesting properties for the processing of xylans from cereal grains, particularly rye arabinoxylan, and show a novel relationship between PcAxy43A and endo-xylanase Xyn10C from strain B-6, providing novel metabolic potential for processing arabinoxylans into xylose and arabinose.
Copyright © 2016, American Society for Microbiology. All Rights Reserved.

Entities:  

Year:  2016        PMID: 27663030      PMCID: PMC5103093          DOI: 10.1128/AEM.02256-16

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  39 in total

1.  The structure of an inverting GH43 beta-xylosidase from Geobacillus stearothermophilus with its substrate reveals the role of the three catalytic residues.

Authors:  Christian Brüx; Alon Ben-David; Dalia Shallom-Shezifi; Maya Leon; Karsten Niefind; Gil Shoham; Yuval Shoham; Dietmar Schomburg
Journal:  J Mol Biol       Date:  2006-03-20       Impact factor: 5.469

2.  Cloning, sequencing, and characterization of the bifunctional xylosidase-arabinosidase from the anaerobic thermophile thermoanaerobacter ethanolicus.

Authors:  V Mai; J Wiegel; W W Lorenz
Journal:  Gene       Date:  2000-04-18       Impact factor: 3.688

3.  Cleavage of structural proteins during the assembly of the head of bacteriophage T4.

Authors:  U K Laemmli
Journal:  Nature       Date:  1970-08-15       Impact factor: 49.962

4.  A novel type of arabinoxylan arabinofuranohydrolase isolated from germinated barley analysis of substrate preference and specificity by nano-probe NMR.

Authors:  H Ferré; A Broberg; J O Duus; K K Thomsen
Journal:  Eur J Biochem       Date:  2000-11

5.  Dividing the Large Glycoside Hydrolase Family 43 into Subfamilies: a Motivation for Detailed Enzyme Characterization.

Authors:  Keith Mewis; Nicolas Lenfant; Vincent Lombard; Bernard Henrissat
Journal:  Appl Environ Microbiol       Date:  2016-01-04       Impact factor: 4.792

6.  A new GH43 α-arabinofuranosidase from Humicola insolens Y1: biochemical characterization and synergistic action with a xylanase on xylan degradation.

Authors:  Xinzhuo Yang; Pengjun Shi; Rui Ma; Huiying Luo; Huoqing Huang; Peilong Yang; Bin Yao
Journal:  Appl Biochem Biotechnol       Date:  2014-11-29       Impact factor: 2.926

7.  Biochemical characterization and identification of the catalytic residues of a family 43 beta-D-xylosidase from Geobacillus stearothermophilus T-6.

Authors:  Dalia Shallom; Maya Leon; Tsafrir Bravman; Alon Ben-David; Galia Zaide; Valery Belakhov; Gil Shoham; Dietmar Schomburg; Timor Baasov; Yuval Shoham
Journal:  Biochemistry       Date:  2005-01-11       Impact factor: 3.162

8.  The GH67 α-glucuronidase of Paenibacillus curdlanolyticus B-6 removes hexenuronic acid groups and facilitates biodegradation of the model xylooligosaccharide hexenuronosyl xylotriose.

Authors:  Krisna Septiningrum; Hiroshi Ohi; Rattiya Waeonukul; Patthra Pason; Chakrit Tachaapaikoon; Khanok Ratanakhanokchai; Junjarus Sermsathanaswadi; Lan Deng; Panida Prawitwong; Akihiko Kosugi
Journal:  Enzyme Microb Technol       Date:  2015-01-25       Impact factor: 3.493

9.  Characterization of a recombinant bifunctional xylosidase/arabinofuranosidase from Phanerochaete chrysosporium.

Authors:  Nguyen Duc Huy; Palvannan Thayumanavan; Tae-Ho Kwon; Seung-Moon Park
Journal:  J Biosci Bioeng       Date:  2013-03-07       Impact factor: 2.894

10.  Functional metagenomics unveils a multifunctional glycosyl hydrolase from the family 43 catalysing the breakdown of plant polymers in the calf rumen.

Authors:  Manuel Ferrer; Azam Ghazi; Ana Beloqui; José María Vieites; Nieves López-Cortés; Julia Marín-Navarro; Taras Y Nechitaylo; María-Eugenia Guazzaroni; Julio Polaina; Agnes Waliczek; Tatyana N Chernikova; Oleg N Reva; Olga V Golyshina; Peter N Golyshin
Journal:  PLoS One       Date:  2012-06-25       Impact factor: 3.240

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  5 in total

1.  High-Throughput Generation of Product Profiles for Arabinoxylan-Active Enzymes from Metagenomes.

Authors:  Maria João Maurício da Fonseca; Zachary Armstrong; Stephen G Withers; Yves Briers
Journal:  Appl Environ Microbiol       Date:  2020-11-10       Impact factor: 4.792

2.  Xylanolytic enzyme consortia from Bacillus sp. NIORKP76 for improved biobleaching of kraft pulp.

Authors:  Pankaj Parab; Rakhee Khandeparker
Journal:  Bioprocess Biosyst Eng       Date:  2021-08-17       Impact factor: 3.210

3.  A Novel Multifunctional Arabinofuranosidase/Endoxylanase/β-Xylosidase GH43 Enzyme from Paenibacillus curdlanolyticus B-6 and Its Synergistic Action To Produce Arabinose and Xylose from Cereal Arabinoxylan.

Authors:  Puangpen Limsakul; Paripok Phitsuwan; Rattiya Waeonukul; Patthra Pason; Chakrit Tachaapaikoon; Kanokwan Poomputsa; Akihiko Kosugi; Khanok Ratanakhanokchai
Journal:  Appl Environ Microbiol       Date:  2021-10-06       Impact factor: 5.005

4.  Chemical Pretreatment-Independent Saccharifications of Xylan and Cellulose of Rice Straw by Bacterial Weak Lignin-Binding Xylanolytic and Cellulolytic Enzymes.

Authors:  Thitiporn Teeravivattanakit; Sirilak Baramee; Paripok Phitsuwan; Somphit Sornyotha; Rattiya Waeonukul; Patthra Pason; Chakrit Tachaapaikoon; Kanokwan Poomputsa; Akihiko Kosugi; Kazuo Sakka; Khanok Ratanakhanokchai
Journal:  Appl Environ Microbiol       Date:  2017-10-31       Impact factor: 4.792

5.  Two distinct catalytic pathways for GH43 xylanolytic enzymes unveiled by X-ray and QM/MM simulations.

Authors:  Mariana A B Morais; Joan Coines; Mariane N Domingues; Renan A S Pirolla; Celisa C C Tonoli; Camila R Santos; Jessica B L Correa; Fabio C Gozzo; Carme Rovira; Mario T Murakami
Journal:  Nat Commun       Date:  2021-01-14       Impact factor: 14.919

  5 in total

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