Literature DB >> 25645104

Aromatic cluster mutations produce focal modulations of β-sheet structure.

Matthew Biancalana1, Koki Makabe, Shude Yan, Shohei Koide.   

Abstract

Site-directed mutagenesis is a powerful tool for altering the structure and function of proteins in a focused manner. Here, we examined how a model β-sheet protein could be tuned by mutation of numerous surface-exposed residues to aromatic amino acids. We designed these aromatic side chain "clusters" at highly solvent-exposed positions in the flat, single-layer β-sheet of Borrelia outer surface protein A (OspA). This unusual β-sheet scaffold allows us to interrogate the effects of these mutations in the context of well-defined structure but in the absence of the strong scaffolding effects of globular protein architecture. We anticipated that the introduction of a cluster of aromatic amino acid residues on the β-sheet surface would result in large conformational changes and/or stabilization and thereby provide new means of controlling the properties of β-sheets. Surprisingly, X-ray crystal structures revealed that the introduction of aromatic clusters produced only subtle conformational changes in the OspA β-sheet. Additionally, despite burying a large degree of hydrophobic surface area, the aromatic cluster mutants were slightly less stable than the wild-type scaffold. These results thereby demonstrate that the introduction of aromatic cluster mutations can serve as a means for subtly modulating β-sheet conformation in protein design.
© 2015 The Protein Society.

Entities:  

Keywords:  beta-sheet formation; conformational stability; protein design; secondary structure

Mesh:

Substances:

Year:  2015        PMID: 25645104      PMCID: PMC4420532          DOI: 10.1002/pro.2657

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  33 in total

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Journal:  J Mol Biol       Date:  2008-03-04       Impact factor: 5.469

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Journal:  Science       Date:  1985-07-05       Impact factor: 47.728

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9.  Aromatic cross-strand ladders control the structure and stability of beta-rich peptide self-assembly mimics.

Authors:  Matthew Biancalana; Koki Makabe; Akiko Koide; Shohei Koide
Journal:  J Mol Biol       Date:  2008-08-22       Impact factor: 5.469

10.  Factors involved in the stability of isolated beta-sheets: Turn sequence, beta-sheet twisting, and hydrophobic surface burial.

Authors:  Clara M Santiveri; Jorge Santoro; Manuel Rico; M Angeles Jiménez
Journal:  Protein Sci       Date:  2004-04       Impact factor: 6.725

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Journal:  Chemistry       Date:  2019-12-27       Impact factor: 5.236

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  2 in total

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