Literature DB >> 12149361

External quality assessment program for qualitative and quantitative detection of hepatitis C virus RNA in diagnostic virology.

Jurjen Schirm1, Anton M van Loon, Elizabeth Valentine-Thon, Paul E Klapper, Jim Reid, Graham M Cleator.   

Abstract

To assess the performance of laboratories in detecting and quantifying hepatitis C virus (HCV) RNA levels in HCV-infected patients, we distributed two proficiency panels for qualitative and quantitative HCV RNA testing. The panels were designed by the European Union Quality Control Concerted Action, prepared by Boston Biomedica Inc., and distributed in May 1999 (panel 1) and February 2000 (panel 2). Each panel consisted of two negative samples and six positive samples, with HCV RNA target levels from 200 to 500,000 copies/ml. Panel 1 had four samples with at least 50,000 copies/ml, and panel 2 had two samples with at least 50,000 copies/ml. Fifty-seven laboratories submitted 45 qualitative and 35 quantitative data sets on panel 1, and 81 laboratories submitted 75 qualitative and 48 quantitative data sets on panel 2. In both panels, about two-thirds of the qualitative data sets and >90% of the quantitative data sets were obtained with commercial assays. With each panel, two data sets gave one false-positive result, corresponding to false-positivity rates of 1.3% and 0.8% for panel 1 and panel 2, respectively. Samples containing at least 50,000 copies/ml were found positive in 97% and 99% of the cases with panel 1 and panel 2, respectively. In contrast, the positive samples containing < or =5,000 copies/ml were reported positive in only 71% and 77% of the cases with panel 1 and panel 2, respectively. Adequate or better scores on qualitative results (all results correct or only the low-positive samples missed) were obtained in 84% (panel 1) and 80% (panel 2) of the data sets. In the analysis of quantitative results, 60% (panel 1) and 73% (panel 2) of the data sets obtained an adequate or better score (> or =80% of the positive results within the range of the geometric mean +/- 0.5 log(10)). Our results indicate that considerable improvements in molecular detection and quantitation of HCV have been achieved, particularly through the use of commercial assays. However, the lowest detection levels of many assays are still too high, and further standardization is still needed. Finally, this study underlines the importance of proficiency panels for monitoring the quality of diagnostic laboratories.

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Year:  2002        PMID: 12149361      PMCID: PMC120662          DOI: 10.1128/JCM.40.8.2973-2980.2002

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN: 0095-1137            Impact factor:   5.948


  19 in total

1.  Multicenter proficiency testing of nucleic acid amplification methods for the detection of enteroviruses.

Authors:  K E Van Vliet; P Muir; J M Echevarria; P E Klapper; G M Cleator; A M Van Loon
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2.  International collaborative study on the second EUROHEP HCV-RNA reference panel.

Authors:  M Damen; H T Cuypers; H L Zaaijer; H W Reesink; W P Schaasberg; W H Gerlich; H G Niesters; P N Lelie
Journal:  J Virol Methods       Date:  1996-04-26       Impact factor: 2.014

3.  Comparison of two quantitative hepatitis C virus reverse transcriptase PCR assays.

Authors:  W K Roth; J H Lee; B Rüster; S Zeuzem
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Authors:  B Yen-Lieberman; D Brambilla; B Jackson; J Bremer; R Coombs; M Cronin; S Herman; D Katzenstein; S Leung; H J Lin; P Palumbo; S Rasheed; J Todd; M Vahey; P Reichelderfer
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5.  Sensitivity and specificity of PCR for detection of Mycobacterium tuberculosis: a blind comparison study among seven laboratories.

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6.  Pretreatment serum hepatitis C virus RNA levels and hepatitis C virus genotype are the main and independent prognostic factors of sustained response to interferon alfa therapy in chronic hepatitis C.

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7.  Reliability of methods for hepatitis B virus DNA detection.

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Journal:  J Clin Virol       Date:  2001-01       Impact factor: 3.168

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  15 in total

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Journal:  J Clin Microbiol       Date:  2005-01       Impact factor: 5.948

2.  Two quality control exercises involving nucleic acid amplification methods for detection of Mycoplasma pneumoniae and Chlamydophila pneumoniae and carried out 2 years apart (in 2002 and 2004).

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Review 3.  International standards and reference materials for quantitative molecular infectious disease testing.

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4.  Sequence Variation in Amplification Target Genes and Standards Influences Interlaboratory Comparison of BK Virus DNA Load Measurement.

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5.  Toward standardization of BK virus monitoring: evaluation of the BK virus R-gene kit for quantification of BK viral load in urine, whole-blood, and plasma specimens.

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6.  Results of the first World Health Organization international collaborative study of detection of human papillomavirus DNA.

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7.  Marked variability of BK virus load measurement using quantitative real-time PCR among commonly used assays.

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9.  Ring test evaluation of the detection of influenza A virus in swine oral fluids by real-time reverse-transcription polymerase chain reaction and virus isolation.

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10.  Comparison of performance characteristics of three real-time reverse transcription-PCR test systems for detection and quantification of hepatitis C virus.

Authors:  M Fernanda Sábato; Mitchell L Shiffman; Michael R Langley; David S Wilkinson; Andrea Ferreira-Gonzalez
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