Literature DB >> 12037293

Protein crystallization for genomics: towards high-throughput optimization techniques.

Naomi E Chayen1, Emmanuel Saridakis.   

Abstract

Protein crystallization has gained a new strategic and commercial relevance in the next phase of the genome projects, in which X-ray crystallography will play a major role. Considerable advances have been made in the automation of protein preparation and also in the X-ray analysis and bioinformatics stages once diffraction-quality crystals are available. These advances have not yet been matched by equally good methods for the crystallization process itself. In the area of crystallization, the main effort and resources are currently being invested into the automation of screening procedures to identify potential crystallization conditions. However, in spite of the ability to generate numerous trials, so far only a small percentage of the proteins produced have led to structure determinations. This is because screening in itself is not usually enough; it has to be complemented by an equally important procedure in crystal production, namely crystal optimization. In the rush towards structural genomics, optimization techniques have been somewhat neglected, mainly because it was hoped that large-scale screening alone would produce the desired results. In addition, optimization has relied on particular individual methods that are often difficult to automate and to adapt to high throughput. This article addresses a major gap in the field of structural genomics by describing practical ways of automating individual optimization methods in order to adapt them to high-throughput techniques.

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Year:  2002        PMID: 12037293     DOI: 10.1107/s0907444902005322

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  8 in total

Review 1.  Protein crystallization for genomics: throughput versus output.

Authors:  Naomi E Chayen
Journal:  J Struct Funct Genomics       Date:  2003

2.  Systematic investigation of protein phase behavior with a microfluidic formulator.

Authors:  Carl L Hansen; Morten O A Sommer; Stephen R Quake
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-27       Impact factor: 11.205

3.  Efficient UV detection of protein crystals enabled by fluorescence excitation at wavelengths longer than 300 nm.

Authors:  Karsten Dierks; Arne Meyer; Dominik Oberthür; Gert Rapp; Howard Einspahr; Christian Betzel
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-03-27

4.  Efficient optimization of crystallization conditions by manipulation of drop volume ratio and temperature.

Authors:  Joseph R Luft; Jennifer R Wolfley; Meriem I Said; Raymond M Nagel; Angela M Lauricella; Jennifer L Smith; Max H Thayer; Christina K Veatch; Edward H Snell; Michael G Malkowski; George T Detitta
Journal:  Protein Sci       Date:  2007-02-27       Impact factor: 6.725

Review 5.  High-throughput crystallography for structural genomics.

Authors:  Andrzej Joachimiak
Journal:  Curr Opin Struct Biol       Date:  2009-09-16       Impact factor: 6.809

Review 6.  Structure-based functional inference in structural genomics.

Authors:  Sung-Hou Kim; Dong Hae Shin; In-Geol Choi; Ursula Schulze-Gahmen; Shengfeng Chen; Rosalind Kim
Journal:  J Struct Funct Genomics       Date:  2003

7.  Optimization of salt concentration in PEG-based crystallization solutions.

Authors:  Mari Yamanaka; Koji Inaka; Naoki Furubayashi; Masaaki Matsushima; Sachiko Takahashi; Hiroaki Tanaka; Satoshi Sano; Masaru Sato; Tomoyuki Kobayashi; Tetsuo Tanaka
Journal:  J Synchrotron Radiat       Date:  2010-11-05       Impact factor: 2.616

8.  Small-scale, semi-automated purification of eukaryotic proteins for structure determination.

Authors:  Ronnie O Frederick; Lai Bergeman; Paul G Blommel; Lucas J Bailey; Jason G McCoy; Jikui Song; Louise Meske; Craig A Bingman; Megan Riters; Nicholas A Dillon; John Kunert; Jung Whan Yoon; Ahyoung Lim; Michael Cassidy; Jason Bunge; David J Aceti; John G Primm; John L Markley; George N Phillips; Brian G Fox
Journal:  J Struct Funct Genomics       Date:  2007-11-06
  8 in total

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