Literature DB >> 17327388

Efficient optimization of crystallization conditions by manipulation of drop volume ratio and temperature.

Joseph R Luft1, Jennifer R Wolfley, Meriem I Said, Raymond M Nagel, Angela M Lauricella, Jennifer L Smith, Max H Thayer, Christina K Veatch, Edward H Snell, Michael G Malkowski, George T Detitta.   

Abstract

An efficient optimization method for the crystallization of biological macromolecules has been developed and tested. This builds on a successful high-throughput technique for the determination of initial crystallization conditions. The optimization method takes an initial condition identified through screening and then varies the concentration of the macromolecule, precipitant, and the growth temperature in a systematic manner. The amount of sample and number of steps is minimized and no biochemical reformulation is required. In the current application a robotic liquid handling system enables high-throughput use, but the technique can easily be adapted in a nonautomated setting. This method has been applied successfully for the rapid optimization of crystallization conditions in nine representative cases.

Mesh:

Year:  2007        PMID: 17327388      PMCID: PMC2203341          DOI: 10.1110/ps.062699707

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  17 in total

1.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Structures of the two 3D domain-swapped RNase A trimers.

Authors:  Yanshun Liu; Giovanni Gotte; Massimo Libonati; David Eisenberg
Journal:  Protein Sci       Date:  2002-02       Impact factor: 6.725

3.  Small-scale batch crystallization of proteins revisited: an underutilized way to grow large protein crystals.

Authors:  Ivan Rayment
Journal:  Structure       Date:  2002-02       Impact factor: 5.006

4.  Crystallization of biological macromolecules from flash frozen samples on the Russian Space Station Mir.

Authors:  S Koszelak; C Leja; A McPherson
Journal:  Biotechnol Bioeng       Date:  1996-11-20       Impact factor: 4.530

5.  Pros and cons of cryocrystallography: should we also collect a room-temperature data set?

Authors:  Kirsty V Dunlop; Randall T Irvin; Bart Hazes
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-12-17

6.  A method for screening the temperature dependence of three-dimensional crystal formation.

Authors:  Michael J Landsberg; James Bond; Christine L Gee; Jennifer L Martin; Ben Hankamer
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-04-19

Review 7.  Comparative studies of protein crystallization by vapour-diffusion and microbatch techniques.

Authors:  N E Chayen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-01-01

8.  Visualization of RNA crystal growth by atomic force microscopy.

Authors:  J D Ng; Y G Kuznetsov; A J Malkin; G Keith; R Giegé; A McPherson
Journal:  Nucleic Acids Res       Date:  1997-07-01       Impact factor: 16.971

9.  Protein crystallization using incomplete factorial experiments.

Authors:  C W Carter; C W Carter
Journal:  J Biol Chem       Date:  1979-12-10       Impact factor: 5.157

10.  Induction of elongation factor Tu-GDP crystal polymorphism by polyethylene glycol contaminants.

Authors:  F Jurnak
Journal:  J Mol Biol       Date:  1985-09-05       Impact factor: 5.469

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  20 in total

1.  Lessons from high-throughput protein crystallization screening: 10 years of practical experience.

Authors:  Joseph R Luft; Edward H Snell; George T Detitta
Journal:  Expert Opin Drug Discov       Date:  2011-03-22       Impact factor: 6.098

2.  Phoenito experiments: combining the strengths of commercial crystallization automation.

Authors:  Janet Newman; Tam M Pham; Thomas S Peat
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-10-31

3.  Feasibility of one-shot-per-crystal structure determination using Laue diffraction.

Authors:  Sterling Cornaby; Doletha M E Szebenyi; Detlef-M Smilgies; David J Schuller; Richard Gillilan; Quan Hao; Donald H Bilderback
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21

Review 4.  Optimization of crystallization conditions for biological macromolecules.

Authors:  Alexander McPherson; Bob Cudney
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-10-31       Impact factor: 1.056

5.  BLASTing away preconceptions in crystallization trials.

Authors:  Gabriel Jan Abrahams; Janet Newman
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2019-02-21       Impact factor: 1.056

6.  What's in a drop? Correlating observations and outcomes to guide macromolecular crystallization experiments.

Authors:  Joseph R Luft; Jennifer R Wolfley; Edward H Snell
Journal:  Cryst Growth Des       Date:  2011-03-02       Impact factor: 4.076

7.  The structure of yeast glutaminyl-tRNA synthetase and modeling of its interaction with tRNA.

Authors:  Thomas D Grant; Joseph R Luft; Jennifer R Wolfley; Mary E Snell; Hiro Tsuruta; Stephanie Corretore; Erin Quartley; Eric M Phizicky; Elizabeth J Grayhack; Edward H Snell
Journal:  J Mol Biol       Date:  2013-04-10       Impact factor: 5.469

8.  Three structural representatives of the PF06855 protein domain family from Staphyloccocus aureus and Bacillus subtilis have SAM domain-like folds and different functions.

Authors:  G V T Swapna; Paolo Rossi; Alexander F Montelione; Jordi Benach; Bomina Yu; Mariam Abashidze; Jayaraman Seetharaman; Rong Xiao; Thomas B Acton; Liang Tong; Gaetano T Montelione
Journal:  J Struct Funct Genomics       Date:  2012-07-29

9.  Structural characterization of a 140 degrees domain movement in the two-step reaction catalyzed by 4-chlorobenzoate:CoA ligase.

Authors:  Albert S Reger; Rui Wu; Debra Dunaway-Mariano; Andrew M Gulick
Journal:  Biochemistry       Date:  2008-07-12       Impact factor: 3.162

10.  The application and use of chemical space mapping to interpret crystallization screening results.

Authors:  Edward H Snell; Ray M Nagel; Ann Wojtaszcyk; Hugh O'Neill; Jennifer L Wolfley; Joseph R Luft
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2008-11-18
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