Literature DB >> 11917019

A novel DNA polymerase homologous to Escherichia coli DNA polymerase I from a higher plant, rice (Oryza sativa L.).

Seisuke Kimura1, Yukinobu Uchiyama, Nobuyuki Kasai, Satoshi Namekawa, Ai Saotome, Tadamasa Ueda, Tsuyu Ando, Toyotaka Ishibashi, Masahiko Oshige, Tomoyuki Furukawa, Taichi Yamamoto, Junji Hashimoto, Kengo Sakaguchi.   

Abstract

A novel DNA polymerase, designated as OsPolI-like, has been identified from the higher plant, rice (Oryza sativa L. cv. Nipponbare). The OsPolI-like cDNA was 3765 bp in length, and the open reading frame encoded a predicted product of 977 amino acid residues with a molecular weight of 100 kDa. The OsPolI-like gene has been mapped to chromosome 8 and contains 12 exons and 11 introns. The encoded protein showed a high degree of sequence and structural homology to Escherichia coli pol I protein, but differed from DNA polymerase gamma and theta. The DNA polymerase domain of OsPolI-like showed DNA polymerase activity. Subcellular fractionation analysis suggested that the protein is localized in the plastid. Northern and western blotting, and in situ hybridization analyses demonstrated preferential expression of OsPolI-like in meristematic tissues such as shoot apical meristem, root apical meristem, leaf primordia and the marginal meristem. Interestingly, no expression was detected in mature leaves, although they have a high chloroplast content. These properties indicated that OsPolI-like is a novel plant DNA polymerase. The function of OsPolI-like is discussed in relation to plastid maturation.

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Year:  2002        PMID: 11917019      PMCID: PMC101828          DOI: 10.1093/nar/30.7.1585

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  39 in total

1.  DNA polymerase B from wheat embryos: a plant delta-like DNA polymerase.

Authors:  M C Richard; S Litvak; M Castroviejo
Journal:  Arch Biochem Biophys       Date:  1991-05-15       Impact factor: 4.013

2.  Molecular cloning of Drosophila mus308, a gene involved in DNA cross-link repair with homology to prokaryotic DNA polymerase I genes.

Authors:  P V Harris; O M Mazina; E A Leonhardt; R B Case; J B Boyd; K C Burtis
Journal:  Mol Cell Biol       Date:  1996-10       Impact factor: 4.272

3.  Molecular cloning of the cDNA for the catalytic subunit of plant DNA polymerase alpha and its cell-cycle dependent expression.

Authors:  M Yokoi; M Ito; M Izumi; H Miyazawa; H Nakai; F Hanaoka
Journal:  Genes Cells       Date:  1997-11       Impact factor: 1.891

4.  DNA polymerase mu (Pol mu), homologous to TdT, could act as a DNA mutator in eukaryotic cells.

Authors:  O Domínguez; J F Ruiz; T Laín de Lera; M García-Díaz; M A González; T Kirchhoff; C Martínez-A; A Bernad; L Blanco
Journal:  EMBO J       Date:  2000-04-03       Impact factor: 11.598

5.  Two types of replication protein A 70 kDa subunit in rice, Oryza sativa: molecular cloning, characterization, and cellular & tissue distribution.

Authors:  T Ishibashi; S Kimura; T Furukawa; M Hatanaka; J Hashimoto; K Sakaguchi
Journal:  Gene       Date:  2001-07-11       Impact factor: 3.688

6.  Conserved sites in the 5'-3' exonuclease domain of Escherichia coli DNA polymerase.

Authors:  P D Gutman; K W Minton
Journal:  Nucleic Acids Res       Date:  1993-09-11       Impact factor: 16.971

7.  Error-prone bypass of certain DNA lesions by the human DNA polymerase kappa.

Authors:  E Ohashi; T Ogi; R Kusumoto; S Iwai; C Masutani; F Hanaoka; H Ohmori
Journal:  Genes Dev       Date:  2000-07-01       Impact factor: 11.361

8.  Identification and characterization of human DNA polymerase beta 2, a DNA polymerase beta -related enzyme.

Authors:  K Nagasawa; K Kitamura; A Yasui; Y Nimura; K Ikeda; M Hirai; A Matsukage; M Nakanishi
Journal:  J Biol Chem       Date:  2000-10-06       Impact factor: 5.157

9.  Characterization of plant proliferating cell nuclear antigen (PCNA) and flap endonuclease-1 (FEN-1), and their distribution in mitotic and meiotic cell cycles.

Authors:  S Kimura; T Suzuki; Y Yanagawa; T Yamamoto; H Nakagawa; I Tanaka; J Hashimoto; K Sakaguchi
Journal:  Plant J       Date:  2001-12       Impact factor: 6.417

10.  Mammalian proliferating cell nuclear antigen stimulates the processivity of two wheat embryo DNA polymerases.

Authors:  P Laquel; S Litvak; M Castroviejo
Journal:  Plant Physiol       Date:  1993-05       Impact factor: 8.340

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  24 in total

1.  Nuclear genes that encode mitochondrial proteins for DNA and RNA metabolism are clustered in the Arabidopsis genome.

Authors:  Annakaisa Elo; Anna Lyznik; Delkin O Gonzalez; Stephen D Kachman; Sally A Mackenzie
Journal:  Plant Cell       Date:  2003-07       Impact factor: 11.277

2.  Chloroplast biogenesis: control of plastid development, protein import, division and inheritance.

Authors:  Wataru Sakamoto; Shin-Ya Miyagishima; Paul Jarvis
Journal:  Arabidopsis Book       Date:  2008-07-22

3.  Divergent roles for the two PolI-like organelle DNA polymerases of Arabidopsis.

Authors:  Jean-Sébastien Parent; Etienne Lepage; Normand Brisson
Journal:  Plant Physiol       Date:  2011-03-22       Impact factor: 8.340

4.  Compositional properties of green-plant plastid genomes.

Authors:  Junko Kusumi; Hidenori Tachida
Journal:  J Mol Evol       Date:  2005-04       Impact factor: 2.395

5.  Variation in mutation dynamics across the maize genome as a function of regional and flanking base composition.

Authors:  Brian R Morton; Irie V Bi; Michael D McMullen; Brandon S Gaut
Journal:  Genetics       Date:  2005-10-11       Impact factor: 4.562

6.  Interaction between proliferating cell nuclear antigen (PCNA) and a DnaJ induced by DNA damage.

Authors:  Taichi Yamamoto; Yoko Mori; Toyotaka Ishibashi; Yukinobu Uchiyama; Tadamasa Ueda; Tsuyu Ando; Junji Hashimoto; Seisuke Kimura; Kengo Sakaguchi
Journal:  J Plant Res       Date:  2005-04-02       Impact factor: 2.629

7.  Roles of Arabidopsis AtREV1 and AtREV7 in translesion synthesis.

Authors:  Shinya Takahashi; Ayako Sakamoto; Shusei Sato; Tomohiko Kato; Satoshi Tabata; Atsushi Tanaka
Journal:  Plant Physiol       Date:  2005-05-20       Impact factor: 8.340

8.  Dual-domain, dual-targeting organellar protein presequences in Arabidopsis can use non-AUG start codons.

Authors:  Alan C Christensen; Anna Lyznik; Saleem Mohammed; Christian G Elowsky; Annakaisa Elo; Ryan Yule; Sally A Mackenzie
Journal:  Plant Cell       Date:  2005-09-16       Impact factor: 11.277

9.  Two X family DNA polymerases, lambda and mu, in meiotic tissues of the basidiomycete, Coprinus cinereus.

Authors:  Aiko Sakamoto; Kazuki Iwabata; Akiyo Koshiyama; Hiroko Sugawara; Takuro Yanai; Yoshihiro Kanai; Ryo Takeuchi; Yoko Daikuhara; Yoichi Takakusagi; Kengo Sakaguchi
Journal:  Chromosoma       Date:  2007-09-02       Impact factor: 4.316

10.  Multiple functions of DNA polymerases.

Authors:  Miguel Garcia-Diaz; Katarzyna Bebenek
Journal:  CRC Crit Rev Plant Sci       Date:  2007-03       Impact factor: 5.188

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