Literature DB >> 21427281

Divergent roles for the two PolI-like organelle DNA polymerases of Arabidopsis.

Jean-Sébastien Parent1, Etienne Lepage, Normand Brisson.   

Abstract

DNA polymerases play a central role in the process of DNA replication. Yet, the proteins in charge of the replication of plant organelle DNA have not been unambiguously identified. There are however many indications that a family of proteins homologous to bacterial DNA polymerase I (PolI) is implicated in organelle DNA replication. Here, we have isolated mutant lines of the PolIA and PolIB genes of Arabidopsis (Arabidopsis thaliana) to test this hypothesis. We find that mutation of both genes is lethal, thus confirming an essential and redundant role for these two proteins. However, the mutation of a single gene is sufficient to cause a reduction in the levels of DNA in both mitochondria and plastids. We also demonstrate that polIb, but not polIa mutant lines, are hypersensitive to ciprofloxacin, a small molecule that specifically induces DNA double-strand breaks in plant organelles, suggesting a function for PolIB in DNA repair. In agreement with this result, a cross between polIb and a plastid Whirly mutant line yielded plants with high levels of DNA rearrangements and severe growth defects, indicating impairments in plastid DNA repair pathways. Taken together, this work provides further evidences for the involvement of the plant PolI-like genes in organelle DNA replication and suggests an additional role for PolIB in DNA repair.

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Year:  2011        PMID: 21427281      PMCID: PMC3091039          DOI: 10.1104/pp.111.173849

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  31 in total

1.  Nuclear genes that encode mitochondrial proteins for DNA and RNA metabolism are clustered in the Arabidopsis genome.

Authors:  Annakaisa Elo; Anna Lyznik; Delkin O Gonzalez; Stephen D Kachman; Sally A Mackenzie
Journal:  Plant Cell       Date:  2003-07       Impact factor: 11.277

2.  Crystal structures of DNA-Whirly complexes and their role in Arabidopsis organelle genome repair.

Authors:  Laurent Cappadocia; Alexandre Maréchal; Jean-Sébastien Parent; Etienne Lepage; Jurgen Sygusch; Normand Brisson
Journal:  Plant Cell       Date:  2010-06-15       Impact factor: 11.277

3.  Break-induced replication and telomerase-independent telomere maintenance require Pol32.

Authors:  John R Lydeard; Suvi Jain; Miyuki Yamaguchi; James E Haber
Journal:  Nature       Date:  2007-08-01       Impact factor: 49.962

4.  The size and form of chromosomes are constant in the nucleus, but highly variable in bacteria, mitochondria and chloroplasts.

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Journal:  Bioessays       Date:  2007-05       Impact factor: 4.345

5.  DinB upregulation is the sole role of the SOS response in stress-induced mutagenesis in Escherichia coli.

Authors:  Rodrigo S Galhardo; Robert Do; Masami Yamada; Errol C Friedberg; P J Hastings; Takehiko Nohmi; Susan M Rosenberg
Journal:  Genetics       Date:  2009-03-06       Impact factor: 4.562

6.  A novel DNA polymerase homologous to Escherichia coli DNA polymerase I from a higher plant, rice (Oryza sativa L.).

Authors:  Seisuke Kimura; Yukinobu Uchiyama; Nobuyuki Kasai; Satoshi Namekawa; Ai Saotome; Tadamasa Ueda; Tsuyu Ando; Toyotaka Ishibashi; Masahiko Oshige; Tomoyuki Furukawa; Taichi Yamamoto; Junji Hashimoto; Kengo Sakaguchi
Journal:  Nucleic Acids Res       Date:  2002-04-01       Impact factor: 16.971

7.  Multiple deoxyribonucleic acid polymerases from quiescent wheat embryos. Purification and characterization of three enzymes from the soluble cytoplasm and one from purified mitochondria.

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Journal:  Biochem J       Date:  1979-07-01       Impact factor: 3.857

8.  Dual-domain, dual-targeting organellar protein presequences in Arabidopsis can use non-AUG start codons.

Authors:  Alan C Christensen; Anna Lyznik; Saleem Mohammed; Christian G Elowsky; Annakaisa Elo; Ryan Yule; Sally A Mackenzie
Journal:  Plant Cell       Date:  2005-09-16       Impact factor: 11.277

9.  NtPolI-like1 and NtPolI-like2, bacterial DNA polymerase I homologs isolated from BY-2 cultured tobacco cells, encode DNA polymerases engaged in DNA replication in both plastids and mitochondria.

Authors:  Yuriko Ono; Atsushi Sakai; Katsuaki Takechi; Susumu Takio; Mari Takusagawa; Hiroyoshi Takano
Journal:  Plant Cell Physiol       Date:  2007-10-17       Impact factor: 4.927

10.  A gamma-like DNA polymerase in spinach chloroplasts.

Authors:  F Sala; A R Amileni; B Parisi; S Spadari
Journal:  Eur J Biochem       Date:  1980-11
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  47 in total

Review 1.  Minireview: DNA replication in plant mitochondria.

Authors:  John D Cupp; Brent L Nielsen
Journal:  Mitochondrion       Date:  2014-03-26       Impact factor: 4.160

2.  Nucleoid-enriched proteomes in developing plastids and chloroplasts from maize leaves: a new conceptual framework for nucleoid functions.

Authors:  Wojciech Majeran; Giulia Friso; Yukari Asakura; Xian Qu; Mingshu Huang; Lalit Ponnala; Kenneth P Watkins; Alice Barkan; Klaas J van Wijk
Journal:  Plant Physiol       Date:  2011-11-07       Impact factor: 8.340

3.  Plastid Genomes of Flowering Plants: Essential Principles.

Authors:  Tracey A Ruhlman; Robert K Jansen
Journal:  Methods Mol Biol       Date:  2021

4.  MSH1 is required for maintenance of the low mutation rates in plant mitochondrial and plastid genomes.

Authors:  Zhiqiang Wu; Gus Waneka; Amanda K Broz; Connor R King; Daniel B Sloan
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-29       Impact factor: 11.205

5.  The Mitochondrial DNA-Associated Protein SWIB5 Influences mtDNA Architecture and Homologous Recombination.

Authors:  Jonas Blomme; Olivier Van Aken; Jelle Van Leene; Teddy Jégu; Riet De Rycke; Michiel De Bruyne; Jasmien Vercruysse; Jonah Nolf; Twiggy Van Daele; Liesbeth De Milde; Mattias Vermeersch; Catherine Colas des Francs-Small; Geert De Jaeger; Moussa Benhamed; A Harvey Millar; Dirk Inzé; Nathalie Gonzalez
Journal:  Plant Cell       Date:  2017-04-18       Impact factor: 11.277

6.  The RECG1 DNA Translocase Is a Key Factor in Recombination Surveillance, Repair, and Segregation of the Mitochondrial DNA in Arabidopsis.

Authors:  Clémentine Wallet; Monique Le Ret; Marc Bergdoll; Marc Bichara; André Dietrich; José M Gualberto
Journal:  Plant Cell       Date:  2015-10-13       Impact factor: 11.277

7.  Effects of reduced chloroplast gene copy number on chloroplast gene expression in maize.

Authors:  Dylan B Udy; Susan Belcher; Rosalind Williams-Carrier; José M Gualberto; Alice Barkan
Journal:  Plant Physiol       Date:  2012-09-13       Impact factor: 8.340

8.  Chloroplast DNA replication is regulated by the redox state independently of chloroplast division in Chlamydomonas reinhardtii.

Authors:  Yukihiro Kabeya; Shin-ya Miyagishima
Journal:  Plant Physiol       Date:  2013-02-27       Impact factor: 8.340

9.  A family portrait: structural comparison of the Whirly proteins from Arabidopsis thaliana and Solanum tuberosum.

Authors:  Laurent Cappadocia; Jean-Sébastien Parent; Jurgen Sygusch; Normand Brisson
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-10-26

10.  Plastid genome instability leads to reactive oxygen species production and plastid-to-nucleus retrograde signaling in Arabidopsis.

Authors:  Étienne Lepage; Éric Zampini; Normand Brisson
Journal:  Plant Physiol       Date:  2013-08-22       Impact factor: 8.340

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