Literature DB >> 18496613

Multiple functions of DNA polymerases.

Miguel Garcia-Diaz1, Katarzyna Bebenek.   

Abstract

The primary role of DNA polymerases is to accurately and efficiently replicate the genome in order to ensure the maintenance of the genetic information and its faithful transmission through generations. This is not a simple task considering the size of the genome and its constant exposure to endogenous and environmental DNA damaging agents. Thus, a number of DNA repair pathways operate in cells to protect the integrity of the genome. In addition to their role in replication, DNA polymerases play a central role in most of these pathways. Given the multitude and the complexity of DNA transactions that depend on DNA polymerase activity, it is not surprising that cells in all organisms contain multiple highly specialized DNA polymerases, the majority of which have only recently been discovered. Five DNA polymerases are now recognized in Escherichia coli, 8 in Saccharomyces cerevisiae, and at least 15 in humans. While polymerases in bacteria, yeast and mammalian cells have been extensively studied much less is known about their counterparts in plants. For example, the plant model organism Arabidopsis thaliana is thought to contain 12 DNA polymerases, whose functions are mostly unknown. Here we review the properties and functions of DNA polymerases focusing on yeast and mammalian cells but paying special attention to the plant enzymes and the special circumstances of replication and repair in plant cells.

Entities:  

Year:  2007        PMID: 18496613      PMCID: PMC2391090          DOI: 10.1080/07352680701252817

Source DB:  PubMed          Journal:  CRC Crit Rev Plant Sci        ISSN: 0735-2689            Impact factor:   5.188


  195 in total

1.  Checkpoint-dependent activation of mutagenic repair in Saccharomyces cerevisiae pol3-01 mutants.

Authors:  A Datta; J L Schmeits; N S Amin; P J Lau; K Myung; R D Kolodner
Journal:  Mol Cell       Date:  2000-09       Impact factor: 17.970

Review 2.  DNA replication fidelity.

Authors:  Thomas A Kunkel
Journal:  J Biol Chem       Date:  2004-02-26       Impact factor: 5.157

3.  Crystal structure of a pol alpha family replication DNA polymerase from bacteriophage RB69.

Authors:  J Wang; A K Sattar; C C Wang; J D Karam; W H Konigsberg; T A Steitz
Journal:  Cell       Date:  1997-06-27       Impact factor: 41.582

Review 4.  A mutator phenotype in cancer.

Authors:  L A Loeb
Journal:  Cancer Res       Date:  2001-04-15       Impact factor: 12.701

5.  DNA polymerase mu (Pol mu), homologous to TdT, could act as a DNA mutator in eukaryotic cells.

Authors:  O Domínguez; J F Ruiz; T Laín de Lera; M García-Díaz; M A González; T Kirchhoff; C Martínez-A; A Bernad; L Blanco
Journal:  EMBO J       Date:  2000-04-03       Impact factor: 11.598

6.  The structure of T. aquaticus DNA polymerase III is distinct from eukaryotic replicative DNA polymerases.

Authors:  Scott Bailey; Richard A Wing; Thomas A Steitz
Journal:  Cell       Date:  2006-09-08       Impact factor: 41.582

7.  DNA polymerase lambda mediates a back-up base excision repair activity in extracts of mouse embryonic fibroblasts.

Authors:  Elena K Braithwaite; Rajendra Prasad; David D Shock; Esther W Hou; William A Beard; Samuel H Wilson
Journal:  J Biol Chem       Date:  2005-03-03       Impact factor: 5.157

8.  Protection from UV-B-induced DNA damage by flavonoids.

Authors:  A Kootstra
Journal:  Plant Mol Biol       Date:  1994-10       Impact factor: 4.076

9.  Investigating the role of the little finger domain of Y-family DNA polymerases in low fidelity synthesis and translesion replication.

Authors:  François Boudsocq; Robert J Kokoska; Brian S Plosky; Alexandra Vaisman; Hong Ling; Thomas A Kunkel; Wei Yang; Roger Woodgate
Journal:  J Biol Chem       Date:  2004-05-21       Impact factor: 5.157

10.  Xeroderma pigmentosum cells with normal levels of excision repair have a defect in DNA synthesis after UV-irradiation.

Authors:  A R Lehmann; S Kirk-Bell; C F Arlett; M C Paterson; P H Lohman; E A de Weerd-Kastelein; D Bootsma
Journal:  Proc Natl Acad Sci U S A       Date:  1975-01       Impact factor: 11.205

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  35 in total

1.  Natural insertions in rice commonly form tandem duplications indicative of patch-mediated double-strand break induction and repair.

Authors:  Justin N Vaughn; Jeffrey L Bennetzen
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-23       Impact factor: 11.205

Review 2.  Unlocking the sugar "steric gate" of DNA polymerases.

Authors:  Jessica A Brown; Zucai Suo
Journal:  Biochemistry       Date:  2011-01-26       Impact factor: 3.162

3.  High variability and rapid evolution of a nanovirus.

Authors:  Ioana Grigoras; Tatiana Timchenko; Ana Grande-Pérez; Lina Katul; Heinrich-Josef Vetten; Bruno Gronenborn
Journal:  J Virol       Date:  2010-06-30       Impact factor: 5.103

4.  Site-specific Acetylation of Histone H3 Decreases Polymerase β Activity on Nucleosome Core Particles in Vitro.

Authors:  Yesenia Rodriguez; John M Hinz; Marian F Laughery; John J Wyrick; Michael J Smerdon
Journal:  J Biol Chem       Date:  2016-03-31       Impact factor: 5.157

5.  Investigation of sliding DNA clamp dynamics by single-molecule fluorescence, mass spectrometry and structure-based modeling.

Authors:  Varun V Gadkari; Sophie R Harvey; Austin T Raper; Wen-Ting Chu; Jin Wang; Vicki H Wysocki; Zucai Suo
Journal:  Nucleic Acids Res       Date:  2018-04-06       Impact factor: 16.971

Review 6.  Structure and function relationships in mammalian DNA polymerases.

Authors:  Nicole M Hoitsma; Amy M Whitaker; Matthew A Schaich; Mallory R Smith; Max S Fairlamb; Bret D Freudenthal
Journal:  Cell Mol Life Sci       Date:  2019-11-13       Impact factor: 9.261

7.  Pre-Steady-State Kinetic Analysis of Truncated and Full-Length Saccharomyces cerevisiae DNA Polymerase Eta.

Authors:  Jessica A Brown; Likui Zhang; Shanen M Sherrer; John-Stephen Taylor; Peter M J Burgers; Zucai Suo
Journal:  J Nucleic Acids       Date:  2010-07-25

8.  Replication stress leads to genome instabilities in Arabidopsis DNA polymerase delta mutants.

Authors:  David Schuermann; Olivier Fritsch; Jan M Lucht; Barbara Hohn
Journal:  Plant Cell       Date:  2009-09-29       Impact factor: 11.277

9.  Phylogenetic evidence for rapid rates of molecular evolution in the single-stranded DNA begomovirus tomato yellow leaf curl virus.

Authors:  Siobain Duffy; Edward C Holmes
Journal:  J Virol       Date:  2007-10-31       Impact factor: 5.103

10.  Plasmid-based lacZalpha assay for DNA polymerase fidelity: application to archaeal family-B DNA polymerase.

Authors:  Stanislaw K Jozwiakowski; Bernard A Connolly
Journal:  Nucleic Acids Res       Date:  2009-06-10       Impact factor: 16.971

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