Literature DB >> 11904172

Ribosome as a molecular machine.

Alexander S Spirin1.   

Abstract

General principles of structure and function of the ribosome are surveyed, and the translating ribosome is regarded as a molecular conveying machine. Two coupled conveying processes, the passing of compact tRNA globules and the drawing of linear mRNA chain through intraribosomal channel, are considered driven by discrete acts of translocation during translation. Instead of mechanical transmission mechanisms and power-stroke 'motors', thermal motion and chemically induced changes in affinities of ribosomal binding sites for their ligands (tRNAs, mRNA, elongation factors) are proposed to underlie all the directional movements within the ribosomal complex. The GTP-dependent catalysis of conformational transitions by elongation factors during translation is also discussed.

Entities:  

Mesh:

Substances:

Year:  2002        PMID: 11904172     DOI: 10.1016/s0014-5793(02)02309-8

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  21 in total

1.  Genetic evidence against the 16S ribosomal RNA helix 27 conformational switch model.

Authors:  Daniel Rodriguez-Correa; Albert E Dahlberg
Journal:  RNA       Date:  2004-01       Impact factor: 4.942

2.  Definition of bases in 23S rRNA essential for ribosomal subunit association.

Authors:  Ulo Maiväli; Jaanus Remme
Journal:  RNA       Date:  2004-04       Impact factor: 4.942

3.  In vitro assembly of semi-artificial molecular machine and its use for detection of DNA damage.

Authors:  Candace L Minchew; Vladimir V Didenko
Journal:  J Vis Exp       Date:  2012-01-11       Impact factor: 1.355

4.  Hypothesis: emergence of translation as a result of RNA helicase evolution.

Authors:  Nikolay Zenkin
Journal:  J Mol Evol       Date:  2012-04-28       Impact factor: 2.395

Review 5.  Origin and evolution of the ribosome.

Authors:  George E Fox
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-06-09       Impact factor: 10.005

6.  Ribosome origins: the relative age of 23S rRNA Domains.

Authors:  James Hury; Uma Nagaswamy; Maia Larios-Sanz; George E Fox
Journal:  Orig Life Evol Biosph       Date:  2006-09-14       Impact factor: 1.950

7.  Semi-artificial Fluorescent Molecular Machine for DNA Damage Detection.

Authors:  Vladimir V Didenko; Candace L Minchew; Stewart Shuman; David S Baskin
Journal:  Nano Lett       Date:  2004-12       Impact factor: 11.189

8.  Guanosine triphosphate acts as a cofactor to promote assembly of initial P-element transposase-DNA synaptic complexes.

Authors:  Mei Tang; Ciro Cecconi; Helen Kim; Carlos Bustamante; Donald C Rio
Journal:  Genes Dev       Date:  2005-06-15       Impact factor: 11.361

9.  The ribosome as a conveying thermal ratchet machine.

Authors:  Alexander S Spirin
Journal:  J Biol Chem       Date:  2009-05-05       Impact factor: 5.157

10.  Sequence-dependent nucleotide dynamics revealed by intercalated ring rotation in DNA-bisnaphthalimide complexes.

Authors:  José Gallego
Journal:  Nucleic Acids Res       Date:  2004-07-07       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.