Literature DB >> 15037769

Definition of bases in 23S rRNA essential for ribosomal subunit association.

Ulo Maiväli1, Jaanus Remme.   

Abstract

The ribosome is a two-subunit molecular machine, sporting a working cycle that involves coordinated movements of the subunits. Recent structural studies of the 70S ribosome describe a rather large number of intersubunit contacts, some of which are dynamic during translocation. We set out to determine which intersubunit contacts are functionally indispensable for the association of ribosome subunits by using a modification interference approach. Modification of the N-1 position of A715, A1912, or A1918 in Escherichia coli 50S subunits is strongly detrimental to 70S ribosome formation. This result points to 23S rRNA helices 34 and 69, and thus bridges B2a and B4, as essential for ensuring stability of the 70S ribosome.

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Year:  2004        PMID: 15037769      PMCID: PMC1370550          DOI: 10.1261/rna.5220504

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  25 in total

1.  Formation of 70S ribosomes: large activation energy is required for the adaptation of exclusively the small ribosomal subunit.

Authors:  Gregor Blaha; Nils Burkhardt; Knud H Nierhaus
Journal:  Biophys Chem       Date:  2002-05-02       Impact factor: 2.352

2.  Structural basis of the ribosomal machinery for peptide bond formation, translocation, and nascent chain progression.

Authors:  Anat Bashan; Ilana Agmon; Raz Zarivach; Frank Schluenzen; Joerg Harms; Rita Berisio; Heike Bartels; Francois Franceschi; Tamar Auerbach; Harly A S Hansen; Elizaveta Kossoy; Maggie Kessler; Ada Yonath
Journal:  Mol Cell       Date:  2003-01       Impact factor: 17.970

3.  Locking and unlocking of ribosomal motions.

Authors:  Mikel Valle; Andrey Zavialov; Jayati Sengupta; Urmila Rawat; Måns Ehrenberg; Joachim Frank
Journal:  Cell       Date:  2003-07-11       Impact factor: 41.582

Review 4.  Ribosomal RNA pseudouridines and pseudouridine synthases.

Authors:  James Ofengand
Journal:  FEBS Lett       Date:  2002-03-06       Impact factor: 4.124

5.  Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension.

Authors:  S Stern; D Moazed; H F Noller
Journal:  Methods Enzymol       Date:  1988       Impact factor: 1.600

6.  Protection of specific sites in 23 S and 5 S RNA from chemical modification by association of 30 S and 50 S ribosomes.

Authors:  W Herr; H F Noller
Journal:  J Mol Biol       Date:  1979-06-05       Impact factor: 5.469

7.  Mechanism of ribosomal subunit association: discrimination of specific sites in 16 S RNA essential for association activity.

Authors:  W Herr; N M Chapman; H F Noller
Journal:  J Mol Biol       Date:  1979-06-05       Impact factor: 5.469

8.  Protection of specific sites in 16 S RNA from chemical modification by association of 30 S and 50 S ribosomes.

Authors:  N M Chapman; H F Noller
Journal:  J Mol Biol       Date:  1977-01-05       Impact factor: 5.469

9.  Ribosome interactions of aminoacyl-tRNA and elongation factor Tu in the codon-recognition complex.

Authors:  Holger Stark; Marina V Rodnina; Hans-Joachim Wieden; Friedrich Zemlin; Wolfgang Wintermeyer; Marin van Heel
Journal:  Nat Struct Biol       Date:  2002-11

10.  Study of the structural dynamics of the E coli 70S ribosome using real-space refinement.

Authors:  Haixiao Gao; Jayati Sengupta; Mikel Valle; Andrei Korostelev; Narayanan Eswar; Scott M Stagg; Patrick Van Roey; Rajendra K Agrawal; Stephen C Harvey; Andrej Sali; Michael S Chapman; Joachim Frank
Journal:  Cell       Date:  2003-06-13       Impact factor: 41.582

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  22 in total

1.  Cryo-electron microscopy structure of the 30S subunit in complex with the YjeQ biogenesis factor.

Authors:  Ahmad Jomaa; Geordie Stewart; Jason A Mears; Inga Kireeva; Eric D Brown; Joaquin Ortega
Journal:  RNA       Date:  2011-09-29       Impact factor: 4.942

2.  Nonbridging phosphate oxygens in 16S rRNA important for 30S subunit assembly and association with the 50S ribosomal subunit.

Authors:  Srikanta Ghosh; Simpson Joseph
Journal:  RNA       Date:  2005-04-05       Impact factor: 4.942

3.  Scaffolding as an organizing principle in trans-translation. The roles of small protein B and ribosomal protein S1.

Authors:  Reynald Gillet; Sukhjit Kaur; Wen Li; Marc Hallier; Brice Felden; Joachim Frank
Journal:  J Biol Chem       Date:  2006-12-19       Impact factor: 5.157

4.  Interaction between the ribosomal subunits: 16S rRNA suppressors of the lethal DeltaA1916 mutation in the 23S rRNA of Escherichia coli.

Authors:  Michael O'connor
Journal:  Mol Genet Genomics       Date:  2007-06-13       Impact factor: 3.291

5.  Helix 69 in 23S rRNA modulates decoding by wild type and suppressor tRNAs.

Authors:  Michael O'Connor
Journal:  Mol Genet Genomics       Date:  2009-07-15       Impact factor: 3.291

6.  Pseudouridine modifications influence binding of aminoglycosides to helix 69 of bacterial ribosomes.

Authors:  Yogo Sakakibara; Christine S Chow
Journal:  Org Biomol Chem       Date:  2017-10-18       Impact factor: 3.876

7.  Dissecting macromolecular recognition sites in ribosome: implication to its self-assembly.

Authors:  Smita P Pilla; Amal Thomas; Ranjit Prasad Bahadur
Journal:  RNA Biol       Date:  2019-06-17       Impact factor: 4.652

8.  Initial bridges between two ribosomal subunits are formed within 9.4 milliseconds, as studied by time-resolved cryo-EM.

Authors:  Tanvir R Shaikh; Aymen S Yassin; Zonghuan Lu; David Barnard; Xing Meng; Toh-Ming Lu; Terence Wagenknecht; Rajendra K Agrawal
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-23       Impact factor: 11.205

9.  Selection of heptapeptides that bind helix 69 of bacterial 23S ribosomal RNA.

Authors:  Moninderpal Kaur; Chamila N Rupasinghe; Edvin Klosi; Mark R Spaller; Christine S Chow
Journal:  Bioorg Med Chem       Date:  2013-01-10       Impact factor: 3.641

10.  Structural Insights into ribosome recycling factor interactions with the 70S ribosome.

Authors:  Raj D Pai; Wen Zhang; Barbara S Schuwirth; Go Hirokawa; Hideko Kaji; Akira Kaji; Jamie H D Cate
Journal:  J Mol Biol       Date:  2008-01-03       Impact factor: 5.469

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