Literature DB >> 17330146

Semi-artificial Fluorescent Molecular Machine for DNA Damage Detection.

Vladimir V Didenko1, Candace L Minchew, Stewart Shuman, David S Baskin.   

Abstract

The design of artificial molecular machines is complicated because the mechanics used in macromachines is not readily adaptable for nano environments. We constructed a semi-artificial molecular device, which contains a naturally occurring molecular machine-a vaccinia virus encoded protein-linked with an artificial part. The self-assembled construct makes two fluorescently labeled detector units. It is the first sensor capable of selectively detecting different types of DNA breaks, exemplifying a practical approach to the design of molecular devices.

Entities:  

Year:  2004        PMID: 17330146      PMCID: PMC1805678          DOI: 10.1021/nl048357e

Source DB:  PubMed          Journal:  Nano Lett        ISSN: 1530-6984            Impact factor:   11.189


  33 in total

1.  Neither caspase-3 nor DNA fragmentation factor is required for high molecular weight DNA degradation in apoptosis.

Authors:  P R Walker; J Leblanc; C Carson; M Ribecco; M Sikorska
Journal:  Ann N Y Acad Sci       Date:  1999       Impact factor: 5.691

Review 2.  A caspase-independent cell clearance program. The LEI/L-DNase II pathway.

Authors:  A Torriglia; P Perani; J Y Brossas; S Altairac; S Zeggai; E Martin; J Tréton; Y Courtois; M F Counis
Journal:  Ann N Y Acad Sci       Date:  2000       Impact factor: 5.691

3.  Probing single molecules in single living cells.

Authors:  T A Byassee; W C Chan; S Nie
Journal:  Anal Chem       Date:  2000-11-15       Impact factor: 6.986

4.  Studies of a positive supercoiling machine. Nucleotide hydrolysis and a multifunctional "latch" in the mechanism of reverse gyrase.

Authors:  A Chapin Rodriguez
Journal:  J Biol Chem       Date:  2002-06-04       Impact factor: 5.157

5.  Site-specific interaction of vaccinia virus topoisomerase I with duplex DNA. Minimal DNA substrate for strand cleavage in vitro.

Authors:  S Shuman
Journal:  J Biol Chem       Date:  1991-06-15       Impact factor: 5.157

6.  Apoptotic DNA fragmentation is detected by a semi-quantitative ligation-mediated PCR of blunt DNA ends.

Authors:  K Staley; A J Blaschke; J Chun
Journal:  Cell Death Differ       Date:  1997-01       Impact factor: 15.828

7.  The Hsc70 co-chaperone CHIP targets immature CFTR for proteasomal degradation.

Authors:  G C Meacham; C Patterson; W Zhang; J M Younger; D M Cyr
Journal:  Nat Cell Biol       Date:  2001-01       Impact factor: 28.824

8.  Presence of double-strand breaks with single-base 3' overhangs in cells undergoing apoptosis but not necrosis.

Authors:  V V Didenko; P J Hornsby
Journal:  J Cell Biol       Date:  1996-12       Impact factor: 10.539

9.  Properties of some nuclear nucleases of rat thymocytes and their changes in radiation-induced apoptosis.

Authors:  L V Nikonova; I P Beletsky; S R Umansky
Journal:  Eur J Biochem       Date:  1993-08-01

Review 10.  Vaccinia virus DNA topoisomerase: a model eukaryotic type IB enzyme.

Authors:  S Shuman
Journal:  Biochim Biophys Acta       Date:  1998-10-01
View more
  8 in total

1.  In vitro assembly of semi-artificial molecular machine and its use for detection of DNA damage.

Authors:  Candace L Minchew; Vladimir V Didenko
Journal:  J Vis Exp       Date:  2012-01-11       Impact factor: 1.355

2.  Express FRET Labeling and Analysis of Phagocytic Clearance.

Authors:  Vladimir V Didenko
Journal:  Methods Mol Biol       Date:  2017

3.  Quick Detection of DNase II-Type Breaks in Formalin-Fixed Tissue Sections.

Authors:  Candace L Minchew; Vladimir V Didenko
Journal:  Methods Mol Biol       Date:  2017

Review 4.  In situ ligation: a decade and a half of experience.

Authors:  Peter J Hornsby; Vladimir V Didenko
Journal:  Methods Mol Biol       Date:  2011

5.  In situ ligation simplified: using PCR fragments for detection of double-strand DNA breaks in tissue sections.

Authors:  Vladimir V Didenko
Journal:  Methods Mol Biol       Date:  2011

6.  5'OH DNA breaks in apoptosis and their labeling by topoisomerase-based approach.

Authors:  Vladimir V Didenko
Journal:  Methods Mol Biol       Date:  2011

7.  Inhibition of p53 attenuates steatosis and liver injury in a mouse model of non-alcoholic fatty liver disease.

Authors:  Zoltan Derdak; Kristine A Villegas; Ragheb Harb; Annie M Wu; Aryanna Sousa; Jack R Wands
Journal:  J Hepatol       Date:  2012-12-02       Impact factor: 25.083

8.  Fluorescent probes detecting the phagocytic phase of apoptosis: enzyme-substrate complexes of topoisomerase and DNA.

Authors:  Candace L Minchew; Vladimir V Didenko
Journal:  Molecules       Date:  2011-06-03       Impact factor: 4.411

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.