Literature DB >> 11860210

Plant genome evolution: lessons from comparative genomics at the DNA level.

Renate Schmidt1.   

Abstract

Angiosperm genomes show tremendous variability in genome size and chromosome number. Nevertheless, comparative genetic mapping has revealed genome collinearity of closely related species. Sequence-based comparisons were used to assess the conservation of gene arrangements. Numerous small rearrangements, insertions/deletions, duplications, inversions and translocations have been detected. Importantly, comparative sequence analyses have unambiguously shown micro-collinearity of distantly related plant species. Duplications and subsequent gene loss have been identified as a particular important factor in the evolution of plant genomes.

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Year:  2002        PMID: 11860210

Source DB:  PubMed          Journal:  Plant Mol Biol        ISSN: 0167-4412            Impact factor:   4.076


  88 in total

Review 1.  Genome relationships: the grass model in current research.

Authors:  K M Devos; M D Gale
Journal:  Plant Cell       Date:  2000-05       Impact factor: 11.277

Review 2.  Comparative sequence analysis of plant nuclear genomes:m microcolinearity and its many exceptions.

Authors:  J L Bennetzen
Journal:  Plant Cell       Date:  2000-07       Impact factor: 11.277

Review 3.  Yesterday's polyploids and the mystery of diploidization.

Authors:  K H Wolfe
Journal:  Nat Rev Genet       Date:  2001-05       Impact factor: 53.242

4.  Pronounced intraspecific haplotype divergence at the RPP5 complex disease resistance locus of Arabidopsis.

Authors:  L Noël; T L Moores; E A van Der Biezen; M Parniske; M J Daniels; J E Parker; J D Jones
Journal:  Plant Cell       Date:  1999-11       Impact factor: 11.277

5.  Rapid genome change in synthetic polyploids of Brassica and its implications for polyploid evolution.

Authors:  K Song; P Lu; K Tang; T C Osborn
Journal:  Proc Natl Acad Sci U S A       Date:  1995-08-15       Impact factor: 11.205

6.  Evaluation of gene prediction software using a genomic data set: application to Arabidopsis thaliana sequences.

Authors:  N Pavy; S Rombauts; P Déhais; C Mathé; D V Ramana; P Leroy; P Rouzé
Journal:  Bioinformatics       Date:  1999-11       Impact factor: 6.937

7.  Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.

Authors:  K Mayer; C Schüller; R Wambutt; G Murphy; G Volckaert; T Pohl; A Düsterhöft; W Stiekema; K D Entian; N Terryn; B Harris; W Ansorge; P Brandt; L Grivell; M Rieger; M Weichselgartner; V de Simone; B Obermaier; R Mache; M Müller; M Kreis; M Delseny; P Puigdomenech; M Watson; T Schmidtheini; B Reichert; D Portatelle; M Perez-Alonso; M Boutry; I Bancroft; P Vos; J Hoheisel; W Zimmermann; H Wedler; P Ridley; S A Langham; B McCullagh; L Bilham; J Robben; J Van der Schueren; B Grymonprez; Y J Chuang; F Vandenbussche; M Braeken; I Weltjens; M Voet; I Bastiaens; R Aert; E Defoor; T Weitzenegger; G Bothe; U Ramsperger; H Hilbert; M Braun; E Holzer; A Brandt; S Peters; M van Staveren; W Dirske; P Mooijman; R Klein Lankhorst; M Rose; J Hauf; P Kötter; S Berneiser; S Hempel; M Feldpausch; S Lamberth; H Van den Daele; A De Keyser; C Buysshaert; J Gielen; R Villarroel; R De Clercq; M Van Montagu; J Rogers; A Cronin; M Quail; S Bray-Allen; L Clark; J Doggett; S Hall; M Kay; N Lennard; K McLay; R Mayes; A Pettett; M A Rajandream; M Lyne; V Benes; S Rechmann; D Borkova; H Blöcker; M Scharfe; M Grimm; T H Löhnert; S Dose; M de Haan; A Maarse; M Schäfer; S Müller-Auer; C Gabel; M Fuchs; B Fartmann; K Granderath; D Dauner; A Herzl; S Neumann; A Argiriou; D Vitale; R Liguori; E Piravandi; O Massenet; F Quigley; G Clabauld; A Mündlein; R Felber; S Schnabl; R Hiller; W Schmidt; A Lecharny; S Aubourg; F Chefdor; R Cooke; C Berger; A Montfort; E Casacuberta; T Gibbons; N Weber; M Vandenbol; M Bargues; J Terol; A Torres; A Perez-Perez; B Purnelle; E Bent; S Johnson; D Tacon; T Jesse; L Heijnen; S Schwarz; P Scholler; S Heber; P Francs; C Bielke; D Frishman; D Haase; K Lemcke; H W Mewes; S Stocker; P Zaccaria; M Bevan; R K Wilson; M de la Bastide; K Habermann; L Parnell; N Dedhia; L Gnoj; K Schutz; E Huang; L Spiegel; M Sehkon; J Murray; P Sheet; M Cordes; J Abu-Threideh; T Stoneking; J Kalicki; T Graves; G Harmon; J Edwards; P Latreille; L Courtney; J Cloud; A Abbott; K Scott; D Johnson; P Minx; D Bentley; B Fulton; N Miller; T Greco; K Kemp; J Kramer; L Fulton; E Mardis; M Dante; K Pepin; L Hillier; J Nelson; J Spieth; E Ryan; S Andrews; C Geisel; D Layman; H Du; J Ali; A Berghoff; K Jones; K Drone; M Cotton; C Joshu; B Antonoiu; M Zidanic; C Strong; H Sun; B Lamar; C Yordan; P Ma; J Zhong; R Preston; D Vil; M Shekher; A Matero; R Shah; I K Swaby; A O'Shaughnessy; M Rodriguez; J Hoffmann; S Till; S Granat; N Shohdy; A Hasegawa; A Hameed; M Lodhi; A Johnson; E Chen; M Marra; R Martienssen; W R McCombie
Journal:  Nature       Date:  1999-12-16       Impact factor: 49.962

8.  The association of flowering time quantitative trait loci with duplicated regions and candidate loci in Brassica oleracea.

Authors:  E J Bohuon; L D Ramsay; J A Craft; A E Arthur; D F Marshall; D J Lydiate; M J Kearsey
Journal:  Genetics       Date:  1998-09       Impact factor: 4.562

9.  Comparative mapping of Arabidopsis thaliana and Brassica oleracea chromosomes reveals islands of conserved organization.

Authors:  S P Kowalski; T H Lan; K A Feldmann; A H Paterson
Journal:  Genetics       Date:  1994-10       Impact factor: 4.562

10.  Alignment of the conserved C genomes of Brassica oleracea and Brassica napus.

Authors:  E J Bohuon; D J Keith; I A Parkin; A G Sharpe; D J Lydiate
Journal:  Theor Appl Genet       Date:  1996-10       Impact factor: 5.699

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  33 in total

Review 1.  Through a genome, darkly: comparative analysis of plant chromosomal DNA.

Authors:  Graham J King
Journal:  Plant Mol Biol       Date:  2002-01       Impact factor: 4.076

2.  Xyloglucan endotransglycosylase/hydrolase genes in cotton and their role in fiber elongation.

Authors:  Joohyun Lee; Teresa H Burns; Ginger Light; Yan Sun; Mohamed Fokar; Yoshihisha Kasukabe; Koichi Fujisawa; Yoshihiko Maekawa; Randy D Allen
Journal:  Planta       Date:  2010-08-14       Impact factor: 4.116

3.  Comparative genetic mapping between octoploid and diploid Fragaria species reveals a high level of colinearity between their genomes and the essentially disomic behavior of the cultivated octoploid strawberry.

Authors:  Mathieu Rousseau-Gueutin; Estelle Lerceteau-Köhler; Laure Barrot; Daniel James Sargent; Amparo Monfort; David Simpson; Pere Arús; Guy Guérin; Béatrice Denoyes-Rothan
Journal:  Genetics       Date:  2008-07-27       Impact factor: 4.562

4.  A segment of the apospory-specific genomic region is highly microsyntenic not only between the apomicts Pennisetum squamulatum and buffelgrass, but also with a rice chromosome 11 centromeric-proximal genomic region.

Authors:  Gustavo Gualtieri; Joann A Conner; Daryl T Morishige; L David Moore; John E Mullet; Peggy Ozias-Akins
Journal:  Plant Physiol       Date:  2006-01-13       Impact factor: 8.340

5.  Non-climacteric fruit ripening in pepper: increased transcription of EIL-like genes normally regulated by ethylene.

Authors:  Sanghyeob Lee; Eun-Joo Chung; Young-Hee Joung; Doil Choi
Journal:  Funct Integr Genomics       Date:  2009-09-16       Impact factor: 3.410

6.  Identification and characterisation of a melon genomic region containing a resistance gene cluster from a constructed BAC library. Microcolinearity between Cucumis melo and Arabidopsis thaliana.

Authors:  Hans van Leeuwen; Amparo Monfort; Hong-Bin Zhang; Pere Puigdomènech
Journal:  Plant Mol Biol       Date:  2003-03       Impact factor: 4.076

7.  Comparing the linkage maps of the close relatives Arabidopsis lyrata and A. thaliana.

Authors:  Helmi Kuittinen; Anita A de Haan; Claus Vogl; Sami Oikarinen; Johanna Leppälä; Marcus Koch; Tom Mitchell-Olds; Charles H Langley; Outi Savolainen
Journal:  Genetics       Date:  2004-11       Impact factor: 4.562

8.  Analysis of the plastidic phosphate translocator gene family in Arabidopsis and identification of new phosphate translocator-homologous transporters, classified by their putative substrate-binding site.

Authors:  Silke Knappe; Ulf-Ingo Flügge; Karsten Fischer
Journal:  Plant Physiol       Date:  2003-03       Impact factor: 8.340

Review 9.  Structural and functional analysis of rice genome.

Authors:  Akhilesh K Tyagi; Jitendra P Khurana; Paramjit Khurana; Saurabh Raghuvanshi; Anumapa Gaur; Anita Kapur; Vikrant Gupta; Dibyendu Kumar; V Ravi; Shubha Vij; Parul Khurana; Sulabha Sharma
Journal:  J Genet       Date:  2004-04       Impact factor: 1.166

10.  Molecular and phenotypic characterization of near isogenic lines at QTL for quantitative resistance to Leptosphaeria maculans in oilseed rape (Brassica napus L.).

Authors:  R Delourme; N Piel; R Horvais; N Pouilly; C Domin; P Vallée; C Falentin; M J Manzanares-Dauleux; M Renard
Journal:  Theor Appl Genet       Date:  2008-08-12       Impact factor: 5.699

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