Literature DB >> 12678558

Identification and characterisation of a melon genomic region containing a resistance gene cluster from a constructed BAC library. Microcolinearity between Cucumis melo and Arabidopsis thaliana.

Hans van Leeuwen1, Amparo Monfort, Hong-Bin Zhang, Pere Puigdomènech.   

Abstract

A bacterial artificial chromosome (BAC) library from the dihaploid melon line 'PIT92' was constructed with a 6 times coverage of the haploid melon genome. A contig of four BACs around the MRGH63 resistance gene homologue fragment was created. The complete sequence of a 117-kb BAC clone allowed to determine two clearly defined regions, the first one containing a cluster of three resistance gene homologues. Separated by a retrotransposon, that contains large long terminal repeats, the second region presents a group of genes with a conserved distribution in two regions of the Arabidopsis genome. The detailed analysis of this region provides a description of the gene structure and the presence of repetitive sequences in a defined fragment of the genome of Cucumis melo.

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Year:  2003        PMID: 12678558     DOI: 10.1023/a:1022573230486

Source DB:  PubMed          Journal:  Plant Mol Biol        ISSN: 0167-4412            Impact factor:   4.076


  45 in total

Review 1.  Plant genome evolution: lessons from comparative genomics at the DNA level.

Authors:  Renate Schmidt
Journal:  Plant Mol Biol       Date:  2002-01       Impact factor: 4.076

2.  Construction of a reference linkage map for melon.

Authors:  M Oliver; J Garcia-Mas; M Cardús; N Pueyo; A L López-Sesé; M Arroyo; H Gómez-Paniagua; P Arús; M C de Vicente
Journal:  Genome       Date:  2001-10       Impact factor: 2.166

3.  Analysis of donor splice sites in different eukaryotic organisms.

Authors:  I B Rogozin; L Milanesi
Journal:  J Mol Evol       Date:  1997-07       Impact factor: 2.395

4.  Unequal exchange and meiotic instability of disease-resistance genes in the Rp1 region of maize.

Authors:  M A Sudupak; J L Bennetzen; S H Hulbert
Journal:  Genetics       Date:  1993-01       Impact factor: 4.562

5.  Genomic sequencing.

Authors:  G M Church; W Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  1984-04       Impact factor: 11.205

6.  Predicting subcellular localization of proteins based on their N-terminal amino acid sequence.

Authors:  O Emanuelsson; H Nielsen; S Brunak; G von Heijne
Journal:  J Mol Biol       Date:  2000-07-21       Impact factor: 5.469

7.  Plant rac proteins induce superoxide production in mammalian cells.

Authors:  H H Hassanain; Y K Sharma; L Moldovan; V Khramtsov; L J Berliner; J P Duvick; P J Goldschmidt-Clermont
Journal:  Biochem Biophys Res Commun       Date:  2000-06-16       Impact factor: 3.575

8.  Splice site prediction in Arabidopsis thaliana pre-mRNA by combining local and global sequence information.

Authors:  S M Hebsgaard; P G Korning; N Tolstrup; J Engelbrecht; P Rouzé; S Brunak
Journal:  Nucleic Acids Res       Date:  1996-09-01       Impact factor: 16.971

9.  Novel properties of satellite DNA from muskmelon.

Authors:  A J Bendich; R S Anderson
Journal:  Proc Natl Acad Sci U S A       Date:  1974-04       Impact factor: 11.205

10.  Point mutants of Moloney murine leukemia virus that fail to package viral RNA: evidence for specific RNA recognition by a "zinc finger-like" protein sequence.

Authors:  R J Gorelick; L E Henderson; J P Hanser; A Rein
Journal:  Proc Natl Acad Sci U S A       Date:  1988-11       Impact factor: 11.205

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  29 in total

1.  Incongruent patterns of local and global genome size evolution in cotton.

Authors:  Corrinne E Grover; HyeRan Kim; Rod A Wing; Andrew H Paterson; Jonathan F Wendel
Journal:  Genome Res       Date:  2004-07-15       Impact factor: 9.043

2.  A genetic map of melon highly enriched with fruit quality QTLs and EST markers, including sugar and carotenoid metabolism genes.

Authors:  R Harel-Beja; G Tzuri; V Portnoy; M Lotan-Pompan; S Lev; S Cohen; N Dai; L Yeselson; A Meir; S E Libhaber; E Avisar; T Melame; P van Koert; H Verbakel; R Hofstede; H Volpin; M Oliver; A Fougedoire; C Stalh; J Fauve; B Copes; Z Fei; J Giovannoni; N Ori; E Lewinsohn; A Sherman; J Burger; Y Tadmor; A A Schaffer; N Katzir
Journal:  Theor Appl Genet       Date:  2010-04-17       Impact factor: 5.699

3.  Analysis of the melon genome in regions encompassing TIR-NBS-LRR resistance genes.

Authors:  Hans van Leeuwen; Jordi Garcia-Mas; María Coca; Pere Puigdoménech; Amparo Monfort
Journal:  Mol Genet Genomics       Date:  2005-04-12       Impact factor: 3.291

4.  Reme1, a Copia retrotransposon in melon, is transcriptionally induced by UV light.

Authors:  Elisenda Ramallo; Ruslan Kalendar; Alan H Schulman; José A Martínez-Izquierdo
Journal:  Plant Mol Biol       Date:  2007-11-22       Impact factor: 4.076

5.  Candidate genes and QTLs for fruit ripening and softening in melon.

Authors:  Eduard Moreno; Javier M Obando; Noelia Dos-Santos; J Pablo Fernández-Trujillo; Antonio J Monforte; Jordi Garcia-Mas
Journal:  Theor Appl Genet       Date:  2007-12-20       Impact factor: 5.699

6.  The frequent transcriptional readthrough of the tobacco Tnt1 retrotransposon and its possible implications for the control of resistance genes.

Authors:  Inmaculada Hernández-Pinzón; Erika de Jesús; Néstor Santiago; Josep M Casacuberta
Journal:  J Mol Evol       Date:  2009-02-17       Impact factor: 2.395

7.  Bin mapping of genomic and EST-derived SSRs in melon (Cucumis melo L.).

Authors:  I Fernandez-Silva; I Eduardo; J Blanca; C Esteras; B Picó; F Nuez; P Arús; J Garcia-Mas; Antonio José Monforte
Journal:  Theor Appl Genet       Date:  2008-09-20       Impact factor: 5.699

8.  Development of SSR markers by next-generation sequencing of Korean landraces of chamoe (Cucumis melo var. makuwa).

Authors:  Inkyu Park; Jungeun Kim; Jeongyeo Lee; Sewon Kim; Okhee Cho; Kyungbong Yang; Jongmoon Ahn; Seokhyeon Nahm; Hyeran Kim
Journal:  Mol Biol Rep       Date:  2013-10-05       Impact factor: 2.316

9.  Dissection of the oligogenic resistance to Cucumber mosaic virus in the melon accession PI 161375.

Authors:  Ali Essafi; Juan A Díaz-Pendón; Enrique Moriones; Antonio J Monforte; Jordi Garcia-Mas; Ana M Martín-Hernández
Journal:  Theor Appl Genet       Date:  2008-09-30       Impact factor: 5.699

10.  A set of EST-SNPs for map saturation and cultivar identification in melon.

Authors:  Wim Deleu; Cristina Esteras; Cristina Roig; Mireia González-To; Iria Fernández-Silva; Daniel Gonzalez-Ibeas; José Blanca; Miguel A Aranda; Pere Arús; Fernando Nuez; Antonio J Monforte; Maria Belén Picó; Jordi Garcia-Mas
Journal:  BMC Plant Biol       Date:  2009-07-15       Impact factor: 4.215

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