Literature DB >> 10617198

Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.

K Mayer1, C Schüller, R Wambutt, G Murphy, G Volckaert, T Pohl, A Düsterhöft, W Stiekema, K D Entian, N Terryn, B Harris, W Ansorge, P Brandt, L Grivell, M Rieger, M Weichselgartner, V de Simone, B Obermaier, R Mache, M Müller, M Kreis, M Delseny, P Puigdomenech, M Watson, T Schmidtheini, B Reichert, D Portatelle, M Perez-Alonso, M Boutry, I Bancroft, P Vos, J Hoheisel, W Zimmermann, H Wedler, P Ridley, S A Langham, B McCullagh, L Bilham, J Robben, J Van der Schueren, B Grymonprez, Y J Chuang, F Vandenbussche, M Braeken, I Weltjens, M Voet, I Bastiaens, R Aert, E Defoor, T Weitzenegger, G Bothe, U Ramsperger, H Hilbert, M Braun, E Holzer, A Brandt, S Peters, M van Staveren, W Dirske, P Mooijman, R Klein Lankhorst, M Rose, J Hauf, P Kötter, S Berneiser, S Hempel, M Feldpausch, S Lamberth, H Van den Daele, A De Keyser, C Buysshaert, J Gielen, R Villarroel, R De Clercq, M Van Montagu, J Rogers, A Cronin, M Quail, S Bray-Allen, L Clark, J Doggett, S Hall, M Kay, N Lennard, K McLay, R Mayes, A Pettett, M A Rajandream, M Lyne, V Benes, S Rechmann, D Borkova, H Blöcker, M Scharfe, M Grimm, T H Löhnert, S Dose, M de Haan, A Maarse, M Schäfer, S Müller-Auer, C Gabel, M Fuchs, B Fartmann, K Granderath, D Dauner, A Herzl, S Neumann, A Argiriou, D Vitale, R Liguori, E Piravandi, O Massenet, F Quigley, G Clabauld, A Mündlein, R Felber, S Schnabl, R Hiller, W Schmidt, A Lecharny, S Aubourg, F Chefdor, R Cooke, C Berger, A Montfort, E Casacuberta, T Gibbons, N Weber, M Vandenbol, M Bargues, J Terol, A Torres, A Perez-Perez, B Purnelle, E Bent, S Johnson, D Tacon, T Jesse, L Heijnen, S Schwarz, P Scholler, S Heber, P Francs, C Bielke, D Frishman, D Haase, K Lemcke, H W Mewes, S Stocker, P Zaccaria, M Bevan, R K Wilson, M de la Bastide, K Habermann, L Parnell, N Dedhia, L Gnoj, K Schutz, E Huang, L Spiegel, M Sehkon, J Murray, P Sheet, M Cordes, J Abu-Threideh, T Stoneking, J Kalicki, T Graves, G Harmon, J Edwards, P Latreille, L Courtney, J Cloud, A Abbott, K Scott, D Johnson, P Minx, D Bentley, B Fulton, N Miller, T Greco, K Kemp, J Kramer, L Fulton, E Mardis, M Dante, K Pepin, L Hillier, J Nelson, J Spieth, E Ryan, S Andrews, C Geisel, D Layman, H Du, J Ali, A Berghoff, K Jones, K Drone, M Cotton, C Joshu, B Antonoiu, M Zidanic, C Strong, H Sun, B Lamar, C Yordan, P Ma, J Zhong, R Preston, D Vil, M Shekher, A Matero, R Shah, I K Swaby, A O'Shaughnessy, M Rodriguez, J Hoffmann, S Till, S Granat, N Shohdy, A Hasegawa, A Hameed, M Lodhi, A Johnson, E Chen, M Marra, R Martienssen, W R McCombie.   

Abstract

The higher plant Arabidopsis thaliana (Arabidopsis) is an important model for identifying plant genes and determining their function. To assist biological investigations and to define chromosome structure, a coordinated effort to sequence the Arabidopsis genome was initiated in late 1996. Here we report one of the first milestones of this project, the sequence of chromosome 4. Analysis of 17.38 megabases of unique sequence, representing about 17% of the genome, reveals 3,744 protein coding genes, 81 transfer RNAs and numerous repeat elements. Heterochromatic regions surrounding the putative centromere, which has not yet been completely sequenced, are characterized by an increased frequency of a variety of repeats, new repeats, reduced recombination, lowered gene density and lowered gene expression. Roughly 60% of the predicted protein-coding genes have been functionally characterized on the basis of their homology to known genes. Many genes encode predicted proteins that are homologous to human and Caenorhabditis elegans proteins.

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Year:  1999        PMID: 10617198     DOI: 10.1038/47134

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  114 in total

1.  Functional dissection of the cis-acting sequences of the Arabidopsis transposable element Tag1 reveals dissimilar subterminal sequence and minimal spacing requirements for transposition.

Authors:  D Liu; A Mack; R Wang; M Galli; J Belk; N I Ketpura; N M Crawford
Journal:  Genetics       Date:  2001-02       Impact factor: 4.562

2.  Patterns of chromosomal duplication in maize and their implications for comparative maps of the grasses.

Authors:  B S Gaut
Journal:  Genome Res       Date:  2001-01       Impact factor: 9.043

Review 3.  Arabidopsis genes encoding components of the chloroplastic protein import apparatus.

Authors:  D Jackson-Constan; K Keegstra
Journal:  Plant Physiol       Date:  2001-04       Impact factor: 8.340

4.  High-resolution pachytene chromosome mapping of bacterial artificial chromosomes anchored by genetic markers reveals the centromere location and the distribution of genetic recombination along chromosome 10 of rice.

Authors:  Z Cheng; G G Presting; C R Buell; R A Wing; J Jiang
Journal:  Genetics       Date:  2001-04       Impact factor: 4.562

5.  Genome-scale compositional comparisons in eukaryotes.

Authors:  A J Gentles; S Karlin
Journal:  Genome Res       Date:  2001-04       Impact factor: 9.043

6.  Many parallel losses of infA from chloroplast DNA during angiosperm evolution with multiple independent transfers to the nucleus.

Authors:  R S Millen; R G Olmstead; K L Adams; J D Palmer; N T Lao; L Heggie; T A Kavanagh; J M Hibberd; J C Gray; C W Morden; P J Calie; L S Jermiin; K H Wolfe
Journal:  Plant Cell       Date:  2001-03       Impact factor: 11.277

7.  Proteomics: broad strokes of expressionism?

Authors:  H B Smith
Journal:  Plant Cell       Date:  2000-03       Impact factor: 11.277

Review 8.  Comparative genome organization in plants: from sequence and markers to chromatin and chromosomes.

Authors:  J S Heslop-Harrison
Journal:  Plant Cell       Date:  2000-05       Impact factor: 11.277

9.  Molecular characterisation of RecQ homologues in Arabidopsis thaliana.

Authors:  F Hartung; H Plchová; H Puchta
Journal:  Nucleic Acids Res       Date:  2000-11-01       Impact factor: 16.971

10.  Is "junk" DNA mostly intron DNA?

Authors:  G K Wong; D A Passey; Y Huang; Z Yang; J Yu
Journal:  Genome Res       Date:  2000-11       Impact factor: 9.043

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