Literature DB >> 14728136

Logic-based remodeling of the Digital Anatomist Foundational Model.

Rainer Beck1, Stefan Schulz.   

Abstract

This paper describes a development cycle for the engineering of large knowledge bases: A graphical tool is used for editing and the content is transformed into a logic-based representation language. This representation is used to check the consistency of the knowledge base as well as to facilitate the reviewing process. Showing the usefulness of this approach, aspects of the Digital Anatomist Foundational Model will be transformed into a Description Logics representation. We introduce a special modeling technique to account for the representation of the complex part/whole relationships in the biomedical domain.

Mesh:

Year:  2003        PMID: 14728136      PMCID: PMC1479995     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  6 in total

1.  Medical knowledge reengineering--converting major portions of the UMLS into a terminological knowledge base.

Authors:  S Schulz; U Hahn
Journal:  Int J Med Inform       Date:  2001-12       Impact factor: 4.046

2.  Normal forms for description logic expressions of clinical concepts in SNOMED RT.

Authors:  K A Spackman
Journal:  Proc AMIA Symp       Date:  2001

3.  The role of definitions in biomedical concept representation.

Authors:  J Michael; J L Mejino; C Rosse
Journal:  Proc AMIA Symp       Date:  2001

4.  Bidirectional mereological reasoning in anatomical knowledge bases.

Authors:  S Schulz
Journal:  Proc AMIA Symp       Date:  2001

5.  Validating clinical terminology structures: integration and cross-validation of Read Thesaurus and GALEN.

Authors:  J E Rogers; C Price; A L Rector; W D Solomon; N Smejko
Journal:  Proc AMIA Symp       Date:  1998

6.  An ontological analysis of the UMLS Metathesaurus.

Authors:  D M Pisanelli; A Gangemi; G Steve
Journal:  Proc AMIA Symp       Date:  1998
  6 in total
  4 in total

1.  Law and order: assessing and enforcing compliance with ontological modeling principles in the Foundational Model of Anatomy.

Authors:  Songmao Zhang; Olivier Bodenreider
Journal:  Comput Biol Med       Date:  2005-09-06       Impact factor: 4.589

2.  Experience in reasoning with the foundational model of anatomy in OWL DL.

Authors:  Songmao Zhang; Olivier Bodenreider; Christine Golbreich
Journal:  Pac Symp Biocomput       Date:  2006

3.  An analysis of multi-type relational interactions in FMA using graph motifs with disjointness constraints.

Authors:  Guo-Qiang Zhang; Lingyun Luo; Chime Ogbuji; Cliff Joslyn; Jose Mejino; Satya S Sahoo
Journal:  AMIA Annu Symp Proc       Date:  2012-11-03

4.  Content-specific auditing of a large scale anatomy ontology.

Authors:  Ira J Kalet; Jose L V Mejino; Vania Wang; Mark Whipple; James F Brinkley
Journal:  J Biomed Inform       Date:  2009-02-25       Impact factor: 6.317

  4 in total

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