Literature DB >> 11818563

Redundancy, antiredundancy, and the robustness of genomes.

David C Krakauer1, Joshua B Plotkin.   

Abstract

Genetic mutations that lead to undetectable or minimal changes in phenotypes are said to reveal redundant functions. Redundancy is common among phenotypes of higher organisms that experience low mutation rates and small population sizes. Redundancy is less common among organisms with high mutation rates and large populations, or among the rapidly dividing cells of multicellular organisms. In these cases, one even observes the opposite tendency: a hypersensitivity to mutation, which we refer to as antiredundancy. In this paper we analyze the evolutionary dynamics of redundancy and antiredundancy. Assuming a cost of redundancy, we find that large populations will evolve antiredundant mechanisms for removing mutants and thereby bolster the robustness of wild-type genomes; whereas small populations will evolve redundancy to ensure that all individuals have a high chance of survival. We propose that antiredundancy is as important for developmental robustness as redundancy, and is an essential mechanism for ensuring tissue-level stability in complex multicellular organisms. We suggest that antiredundancy deserves greater attention in relation to cancer, mitochondrial disease, and virus infection.

Entities:  

Mesh:

Year:  2002        PMID: 11818563      PMCID: PMC122203          DOI: 10.1073/pnas.032668599

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  51 in total

Review 1.  Evolutionary preservation of redundant duplicated genes.

Authors:  D C Krakauer; M A Nowak
Journal:  Semin Cell Dev Biol       Date:  1999-10       Impact factor: 7.727

Review 2.  Canalization in evolutionary genetics: a stabilizing theory?

Authors:  G Gibson; G Wagner
Journal:  Bioessays       Date:  2000-04       Impact factor: 4.345

Review 3.  Viruses at the edge of adaptation.

Authors:  E Domingo
Journal:  Virology       Date:  2000-05-10       Impact factor: 3.616

4.  mRNA surveillance mitigates genetic dominance in Caenorhabditis elegans.

Authors:  B M Cali; P Anderson
Journal:  Mol Gen Genet       Date:  1998-11

Review 5.  The bottleneck: mitochondrial imperatives in oogenesis and ovarian follicular fate.

Authors:  R P Jansen; K de Boer
Journal:  Mol Cell Endocrinol       Date:  1998-10-25       Impact factor: 4.102

Review 6.  Role of telomerase in cell senescence and oncogenesis.

Authors:  V Urquidi; D Tarin; S Goodison
Journal:  Annu Rev Med       Date:  2000       Impact factor: 13.739

7.  Robustness against mutations in genetic networks of yeast.

Authors:  A Wagner
Journal:  Nat Genet       Date:  2000-04       Impact factor: 38.330

8.  Crystal structure of a class I alpha1,2-mannosidase involved in N-glycan processing and endoplasmic reticulum quality control.

Authors:  F Vallée; F Lipari; P Yip; B Sleno; A Herscovics; P L Howell
Journal:  EMBO J       Date:  2000-02-15       Impact factor: 11.598

9.  Suppression of nonsense mutations in cell culture and mice by multimerized suppressor tRNA genes.

Authors:  M Buvoli; A Buvoli; L A Leinwand
Journal:  Mol Cell Biol       Date:  2000-05       Impact factor: 4.272

10.  Induction of autophagy and inhibition of tumorigenesis by beclin 1.

Authors:  X H Liang; S Jackson; M Seaman; K Brown; B Kempkes; H Hibshoosh; B Levine
Journal:  Nature       Date:  1999-12-09       Impact factor: 49.962

View more
  87 in total

1.  Probability of fixation of an advantageous mutant in a viral quasispecies.

Authors:  Claus O Wilke
Journal:  Genetics       Date:  2003-02       Impact factor: 4.562

2.  The conservation of redundancy in genetic systems: effects of sexual and asexual reproduction.

Authors:  J A Morris; R D Morris
Journal:  J Biosci       Date:  2003-12       Impact factor: 1.826

Review 3.  Noisy clues to the origin of life.

Authors:  David C Krakauer; Akira Sasaki
Journal:  Proc Biol Sci       Date:  2002-12-07       Impact factor: 5.349

4.  Long-term evolution of the Luteoviridae: time scale and mode of virus speciation.

Authors:  Israel Pagán; Edward C Holmes
Journal:  J Virol       Date:  2010-04-07       Impact factor: 5.103

5.  Evolution of molecular error rates and the consequences for evolvability.

Authors:  Etienne Rajon; Joanna Masel
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-03       Impact factor: 11.205

6.  Properties of overlapping genes are conserved across microbial genomes.

Authors:  Zackary I Johnson; Sallie W Chisholm
Journal:  Genome Res       Date:  2004-11       Impact factor: 9.043

Review 7.  Adaptive value of high mutation rates of RNA viruses: separating causes from consequences.

Authors:  Santiago F Elena; Rafael Sanjuán
Journal:  J Virol       Date:  2005-09       Impact factor: 5.103

8.  Evolutionary capacitance may be favored by natural selection.

Authors:  Joanna Masel
Journal:  Genetics       Date:  2005-05-23       Impact factor: 4.562

9.  The cost of replication fidelity in an RNA virus.

Authors:  Victoria Furió; Andrés Moya; Rafael Sanjuán
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-08       Impact factor: 11.205

Review 10.  Mechanisms of tumor resistance to EGFR-targeted therapies.

Authors:  Elizabeth A Hopper-Borge; Rochelle E Nasto; Vladimir Ratushny; Louis M Weiner; Erica A Golemis; Igor Astsaturov
Journal:  Expert Opin Ther Targets       Date:  2009-03       Impact factor: 6.902

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.