Literature DB >> 11752285

Update of AMmtDB: a database of multi-aligned Metazoa mitochondrial DNA sequences.

Cecilia Lanave1, Flavio Licciulli, Mariateresa De Robertis, Alessandra Marolla, Marcella Attimonelli.   

Abstract

The AMmtDB database (http://bighost.area.ba.cnr.it/mitochondriome) has been updated by collecting the multi-aligned sequences of Chordata and Invertebrata mitochondrial genes coding for proteins and tRNAs. Links to the multi-aligned mtDNA intraspecies variants, collected in VarMmtDB at the Mitochondriome web site, have been introduced. The genes coding for proteins are multi-aligned based on the translated sequences and both the nucleotide and amino acid multi-alignments are provided. AMmtDB data selected through SRS can be viewed and managed using GeneDoc or other programs for the management of multi-aligned data depending on the user's operative system. The multiple alignments have been produced with CLUSTALW and PILEUP programs and then carefully optimized manually.

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Substances：

Year:  2002        PMID： 11752285      PMCID： PMC99074          DOI： 10.1093/nar/30.1.174

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  8 in total

1.  Update of AMmtDB: a database of multi-aligned metazoa mitochondrial DNA sequences.

Authors:  C Lanave; S Liuni; F Licciulli; M Attimonelli
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  The EMBL nucleotide sequence database.

Authors:  G Stoesser; W Baker; A van den Broek; E Camon; M Garcia-Pastor; C Kanz; T Kulikova; V Lombard; R Lopez; H Parkinson; N Redaschi; P Sterk; P Stoehr; M A Tuli
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

3.  CLUSTAL V: improved software for multiple sequence alignment.

Authors:  D G Higgins; A J Bleasby; R Fuchs
Journal:  Comput Appl Biosci       Date:  1992-04

4.  SRS: information retrieval system for molecular biology data banks.

Authors:  T Etzold; A Ulyanov; P Argos
Journal:  Methods Enzymol       Date:  1996       Impact factor: 1.600

5.  Mammalian mitochondrial D-loop region structural analysis: identification of new conserved sequences and their functional and evolutionary implications.

Authors:  E Sbisà; F Tanzariello; A Reyes; G Pesole; C Saccone
Journal:  Gene       Date:  1997-12-31       Impact factor: 3.688

Review 6.  The evolution of mitochondrial DNA.

Authors:  C Saccone
Journal:  Curr Opin Genet Dev       Date:  1994-12       Impact factor: 5.578

7.  A comprehensive set of sequence analysis programs for the VAX.

Authors:  J Devereux; P Haeberli; O Smithies
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

8.  Database resources of the National Center for Biotechnology Information.

Authors:  D L Wheeler; D M Church; A E Lash; D D Leipe; T L Madden; J U Pontius; G D Schuler; L M Schriml; T A Tatusova; L Wagner; B A Rapp
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971
  8 in total
  3 in total

1.  OGRe: a relational database for comparative analysis of mitochondrial genomes.

Authors:  Daniel Jameson; Andrew P Gibson; Cendrine Hudelot; Paul G Higgs
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

2.  Vasa Is a Potential Germ Cell Marker in Leopard Coral Grouper (Plectropomus leopardus).

Authors:  Mingyi Wang; Hui Ding; Shaoxuan Wu; Mengya Wang; Cun Wei; Bo Wang; Zhenmin Bao; Jingjie Hu
Journal:  Genes (Basel)       Date:  2022-06-16       Impact factor: 4.141

3.  Population explosion in the yellow-spined bamboo locust Ceracris kiangsu and inferences for the impact of human activity.

Authors:  Zhou Fan; Guo-Fang Jiang; Yu-Xiang Liu; Qi-Xin He; Benjamin Blanchard
Journal:  PLoS One       Date:  2014-03-06       Impact factor: 3.240
  3 in total

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