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Literature DB >> 1591615

CLUSTAL V: improved software for multiple sequence alignment.

Abstract

The CLUSTAL package of multiple sequence alignment programs has been completely rewritten and many new features added. The new software is a single program called CLUSTAL V, which is written in C and can be used on any machine with a standard C compiler. The main new features are the ability to store and reuse old alignments and the ability to calculate phylogenetic trees after alignment. The program is simple to use, completely menu driven and on-line help is provided.

Mesh：

Year: 1992 PMID： 1591615 DOI： 10.1093/bioinformatics/8.2.189

Source DB: PubMed Journal: Comput Appl Biosci ISSN： 0266-7061

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Cited

659 in total

1. The subgenus-specific C-terminal region of protein IX is located on the surface of the adenovirus capsid.

Authors: A Akalu; H Liebermann; U Bauer; H Granzow; W Seidel
Journal: J Virol Date: 1999-07 Impact factor: 5.103

2. Molecular characterization of a toluene-degrading methanogenic consortium.

Authors: M Ficker; K Krastel; S Orlicky; E Edwards
Journal: Appl Environ Microbiol Date: 1999-12 Impact factor: 4.792

3. Differentiation of two biovars of Ureaplasma urealyticum based on the 16S-23S rRNA intergenic spacer region.

Authors: R Harasawa; Y Kanamoto
Journal: J Clin Microbiol Date: 1999-12 Impact factor: 5.948

4. Fine mapping of inhibitory anti-alpha5 monoclonal antibody epitopes that differentially affect integrin-ligand binding.

Authors: L Burrows; K Clark; A P Mould; M J Humphries
Journal: Biochem J Date: 1999-12-01 Impact factor: 3.857

10. The developmental expression of the maize regulatory gene Hopi determines germination-dependent anthocyanin accumulation.

Authors: K Petroni; E Cominelli; G Consonni; G Gusmaroli; G Gavazzi; C Tonelli
Journal: Genetics Date: 2000-05 Impact factor: 4.562

CLUSTAL V: improved software for multiple sequence alignment.

1. The subgenus-specific C-terminal region of protein IX is located on the surface of the adenovirus capsid.

2. Molecular characterization of a toluene-degrading methanogenic consortium.

3. Differentiation of two biovars of Ureaplasma urealyticum based on the 16S-23S rRNA intergenic spacer region.

4. Fine mapping of inhibitory anti-alpha5 monoclonal antibody epitopes that differentially affect integrin-ligand binding.

5. Update of AMmtDB: a database of multi-aligned metazoa mitochondrial DNA sequences.

6. Sequence analysis of mitochondrial 16S ribosomal RNA gene fragment from seven mosquito species.

7. Evolution and horizontal transfer of dUTPase-encoding genes in viruses and their hosts.

8. Evolution of the rodent eosinophil-associated RNase gene family by rapid gene sorting and positive selection.

9. The X-ray structure of a chitinase from the pathogenic fungus Coccidioides immitis.

10. The developmental expression of the maize regulatory gene Hopi determines germination-dependent anthocyanin accumulation.