Literature DB >> 11752279

HOWDY: an integrated database system for human genome research.

Mika Hirakawa1.   

Abstract

HOWDY is an integrated database system for accessing and analyzing human genomic information (http://www-alis.tokyo.jst.go.jp/HOWDY/). HOWDY stores information about relationships between genetic objects and the data extracted from a number of databases. HOWDY consists of an Internet accessible user interface that allows thorough searching of the human genomic databases using the gene symbols and their aliases. It also permits flexible editing of the sequence data. The database can be searched using simple words and the search can be restricted to a specific cytogenetic location. Linear maps displaying markers and genes on contig sequences are available, from which an object can be chosen. Any search starting point identifies all the information matching the query. HOWDY provides a convenient search environment of human genomic data for scientists unsure which database is most appropriate for their search.

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Year:  2002        PMID: 11752279      PMCID: PMC99130          DOI: 10.1093/nar/30.1.152

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  9 in total

1.  DNA data bank of Japan (DDBJ) in collaboration with mass sequencing teams.

Authors:  Y Tateno; S Miyazaki; M Ota; H Sugawara; T Gojobori
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  GenBank.

Authors:  D A Benson; I Karsch-Mizrachi; D J Lipman; J Ostell; B A Rapp; D L Wheeler
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  dbSNP: the NCBI database of genetic variation.

Authors:  S T Sherry; M H Ward; M Kholodov; J Baker; L Phan; E M Smigielski; K Sirotkin
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

4.  RefSeq and LocusLink: NCBI gene-centered resources.

Authors:  K D Pruitt; D R Maglott
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

5.  The EMBL nucleotide sequence database.

Authors:  G Stoesser; W Baker; A van den Broek; E Camon; M Garcia-Pastor; C Kanz; T Kulikova; V Lombard; R Lopez; H Parkinson; N Redaschi; P Sterk; P Stoehr; M A Tuli
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

6.  JSNP: a database of common gene variations in the Japanese population.

Authors:  Mika Hirakawa; Toshihiro Tanaka; Yoichi Hashimoto; Masako Kuroda; Toshihisa Takagi; Yusuke Nakamura
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

7.  The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

Authors:  A Bairoch; R Apweiler
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

8.  Future vision of the GDB human genome database.

Authors:  A J Cuticchia
Journal:  Hum Mutat       Date:  2000       Impact factor: 4.878

9.  Database resources of the National Center for Biotechnology Information.

Authors:  D L Wheeler; D M Church; A E Lash; D D Leipe; T L Madden; J U Pontius; G D Schuler; L M Schriml; T A Tatusova; L Wagner; B A Rapp
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

  9 in total
  2 in total

1.  Integrated genome sizing (IGS) approach for the parallelization of whole genome analysis.

Authors:  Peter Sona; Jong Hui Hong; Sunho Lee; Byong Joon Kim; Woon-Young Hong; Jongcheol Jung; Han-Na Kim; Hyung-Lae Kim; David Christopher; Laurent Herviou; Young Hwan Im; Kwee-Yum Lee; Tae Soon Kim; Jongsun Jung
Journal:  BMC Bioinformatics       Date:  2018-12-03       Impact factor: 3.169

2.  Current limitations of SNP data from the public domain for studies of complex disorders: a test for ten candidate genes for obesity and osteoporosis.

Authors:  Volodymyr Dvornyk; Ji-Rong Long; Dong-Hai Xiong; Peng-Yuan Liu; Lan-Juan Zhao; Hui Shen; Yuan-Yuan Zhang; Yong-Jun Liu; Sonia Rocha-Sanchez; Peng Xiao; Robert R Recker; Hong-Wen Deng
Journal:  BMC Genet       Date:  2004-02-25       Impact factor: 2.797

  2 in total

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