Literature DB >> 116192

Analysis of RNA secondary structure by photochemical reversal of psoralen crosslinks.

D Rabin, D M Crothers.   

Abstract

Aminomethyltrioxsalen (AMT), a psoralen, is known to cause interstrand crosslinks in double stranded nucleic acids. We have demonstrated the photochemical reversal of this reaction, and have used this result to develop a method for identification of specific sequences which are adjacent because of RNA secondary structure formation. E. coli 5S rRNA is used as a model system. We isolated and characterized a product that is derived from the stem region of 5S RNA.

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Year:  1979        PMID： 116192      PMCID： PMC328048          DOI： 10.1093/nar/7.3.689

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  29 in total

1.  Molecular and genetic basis of furocoumarin reactions.

Authors:  B R Scott; M A Pathak; G R Mohn
Journal:  Mutat Res       Date:  1976       Impact factor: 2.433

2.  Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli.

Authors:  J Brosius; M L Palmer; P J Kennedy; H F Noller
Journal:  Proc Natl Acad Sci U S A       Date:  1978-10       Impact factor: 11.205

3.  Accessibility of Escherichia coli 5S RNA base residues to chemical reagents. Influence of chemical alterations on the affinity of 5S RNA for the 50S subunit structure.

Authors:  G Bellemare; B R Jordan; J Rocca-Serra; R Monier
Journal:  Biochimie       Date:  1972       Impact factor: 4.079

4.  Stability of ribonucleic acid double-stranded helices.

Authors:  P N Borer; B Dengler; I Tinoco; O C Uhlenbeck
Journal:  J Mol Biol       Date:  1974-07-15       Impact factor: 5.469

5.  Secondary structure maps of ribosomal RNA and DNA. I. Processing of Xenopus laevis ribosomal RNA and structure of single-stranded ribosomal DNA.

Authors:  P K Wellauer; I B Dawid
Journal:  J Mol Biol       Date:  1974-10-25       Impact factor: 5.469

6.  Structure of psoralen-crosslinked ribosomal RNA from Drosophila melanogaster.

Authors:  P L Wollenzien; D C Youvan; J E Hearst
Journal:  Proc Natl Acad Sci U S A       Date:  1978-04       Impact factor: 11.205

7.  RNA sequencing with radioactive chain-terminating ribonucleotides.

Authors:  F R Kramer; D R Mills
Journal:  Proc Natl Acad Sci U S A       Date:  1978-11       Impact factor: 11.205

8.  Hydrogen bonding in yeast phenylalanine transfer RNA.

Authors:  G J Quigley; A H Wang; N C Seeman; F L Suddath; A Rich; J L Sussman; S H Kim
Journal:  Proc Natl Acad Sci U S A       Date:  1975-12       Impact factor: 11.205

9.  Heterogeneous nuclear RNA double-stranded regions probed in living HeLa cells by crosslinking with the psoralen derivative aminomethyltrioxsalen.

Authors:  J P Calvet; T Pederson
Journal:  Proc Natl Acad Sci U S A       Date:  1979-02       Impact factor: 11.205

10.  Mapping adenines, guanines, and pyrimidines in RNA.

Authors:  H Donis-Keller; A M Maxam; W Gilbert
Journal:  Nucleic Acids Res       Date:  1977-08       Impact factor: 16.971
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  15 in total

Review 1.  The RNA Base-Pairing Problem and Base-Pairing Solutions.

Authors:  Zhipeng Lu; Howard Y Chang
Journal:  Cold Spring Harb Perspect Biol       Date:  2018-12-03       Impact factor: 10.005

2.  Nuclease S1 analysis of eubacterial 5S rRNA secondary structure.

Authors:  M T MacDonell; R R Colwell
Journal:  J Mol Evol       Date:  1985       Impact factor: 2.395

3.  Reconstitution of biologically active 50S ribosomal subunits with artificial 5S RNA molecules carrying disturbances in the base pairing within the molecular stalk.

Authors:  H A Raué; S Lorenz; V A Erdmann; R J Planta
Journal:  Nucleic Acids Res       Date:  1981-03-11       Impact factor: 16.971

4.  Identification of the modified nucleotides produced by covalent photoaddition of hydroxymethyltrimethylpsoralen to RNA.

Authors:  J P Bachellerie; J F Thompson; M R Wegnez; J E Hearst
Journal:  Nucleic Acids Res       Date:  1981-05-11       Impact factor: 16.971

5.  A structural model of 5S RNA from E. coli based on intramolecular crosslinking evidence.

Authors:  J Hancock; R Wagner
Journal:  Nucleic Acids Res       Date:  1982-02-25       Impact factor: 16.971

6.  Mapping tRNA structure in solution using double-strand-specific ribonuclease V1 from cobra venom.

Authors:  R E Lockard; A Kumar
Journal:  Nucleic Acids Res       Date:  1981-10-10       Impact factor: 16.971

7.  Bifunctional cross-linking approaches for mass spectrometry-based investigation of nucleic acids and protein-nucleic acid assemblies.

Authors:  M Scalabrin; S M Dixit; M M Makshood; C E Krzemien; Daniele Fabris
Journal:  Methods       Date:  2018-05-10       Impact factor: 3.608

8.  Mapping of psoralen cross-linked nucleotides in RNA.

Authors:  E Garrett-Wheeler; R E Lockard; A Kumar
Journal:  Nucleic Acids Res       Date:  1984-04-11       Impact factor: 16.971

9.  The secondary structure of oocyte and somatic 5S ribosomal RNAs of the fish Misgurnus fossilis L. from nuclease hydrolyses and chemical modification data.

Authors:  T I Serenkova; A M Mazo; T D Mashkova; I Toots; A Nigul; L L Kisselev
Journal:  Nucleic Acids Res       Date:  1984-07-11       Impact factor: 16.971

10.  Identification of a site of psoralen crosslinking in E. coli 16S ribosomal RNA.

Authors:  S Turner; J F Thompson; J E Hearst; H F Noller
Journal:  Nucleic Acids Res       Date:  1982-05-11       Impact factor: 16.971
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