Literature DB >> 6285311

Identification of a site of psoralen crosslinking in E. coli 16S ribosomal RNA.

S Turner, J F Thompson, J E Hearst, H F Noller.   

Abstract

We have developed a 2-dimensional gel method for identification of RNA sequences crosslinked by the intercalative drug 4'-hydroxymethyl-4,5',8-trimethylpsoralen (HMT). This method is being used to localize such sites in E. coli ribosomal RNA. We report here the identification of a site for HMT crosslinking within positions 434 and 497 of 16S rRNA. We suggest a likely site for HMT intercalation, in which residues U548 and U473 become crosslinked via the drug.

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Year:  1982        PMID： 6285311      PMCID： PMC320659          DOI： 10.1093/nar/10.9.2839

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  40 in total

1.  Base-pairing between distant regions of the Escherichia coli 16 S ribosomal RNA in solution.

Authors:  P Wollenzien; J E Hearst; P Thammana; C R Cantor
Journal:  J Mol Biol       Date:  1979-11-25       Impact factor: 5.469

2.  The hydrodynamic and spectroscopic properties of 16 S RNA from Escherichia coli ribosome in reconstitution buffer.

Authors:  S H Allen; K P Wong
Journal:  J Biol Chem       Date:  1978-12-25       Impact factor: 5.157

3.  Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli.

Authors:  J Brosius; M L Palmer; P J Kennedy; H F Noller
Journal:  Proc Natl Acad Sci U S A       Date:  1978-10       Impact factor: 11.205

4.  Functional modification of 16S ribosomal RNA by kethoxal.

Authors:  H F Noller; J B Chaires
Journal:  Proc Natl Acad Sci U S A       Date:  1972-11       Impact factor: 11.205

5.  Nucleotide sequences from specific areas of the 16S and 23S ribosomal RNAs of E. coli.

Authors:  P Fellner
Journal:  Eur J Biochem       Date:  1969-11

6.  Identification of a 16S rna sequence located in the decoding site of 30S ribosomes.

Authors:  R Wagner; H G Gassen
Journal:  FEBS Lett       Date:  1976-09-01       Impact factor: 4.124

7.  Structure and topology of 16S ribosomal RNA. An analysis of the pattern of psoralen crosslinking.

Authors:  C R Cantor; P L Wollenzien; J E Hearst
Journal:  Nucleic Acids Res       Date:  1980-04-25       Impact factor: 16.971

8.  Evidence for RNA-RNA cross-link formation in Escherichia coli ribosomes.

Authors:  C Zwieb; A Ross; J Rinke; M Meinke; R Brimacombe
Journal:  Nucleic Acids Res       Date:  1978-08       Impact factor: 16.971

9.  Structural organization of the 16S ribosomal RNA from E. coli. Topography and secondary structure.

Authors:  P Stiegler; P Carbon; M Zuker; J P Ebel; C Ehresmann
Journal:  Nucleic Acids Res       Date:  1981-05-11       Impact factor: 16.971

10.  Covalent cross-linking of transfer ribonucleic acid to the ribosomal P site. Mechanism and site of reaction in transfer ribonucleic acid.

Authors:  J Ofengand; R Liou; J Kohut; I Schwartz; R A Zimmermann
Journal:  Biochemistry       Date:  1979-10-02       Impact factor: 3.162
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  6 in total

Review 1.  Structure and function of ribosomal RNA.

Authors:  R Brimacombe; W Stiege
Journal:  Biochem J       Date:  1985-07-01       Impact factor: 3.857

Review 2.  Detailed analysis of the higher-order structure of 16S-like ribosomal ribonucleic acids.

Authors:  C R Woese; R Gutell; R Gupta; H F Noller
Journal:  Microbiol Rev       Date:  1983-12

3.  Mapping of psoralen cross-linked nucleotides in RNA.

Authors:  E Garrett-Wheeler; R E Lockard; A Kumar
Journal:  Nucleic Acids Res       Date:  1984-04-11       Impact factor: 16.971

4.  Precise localisation of three intra-RNA cross-links in 23S RNA and one in 5S RNA, induced by treatment of Escherichia coli 50S ribosomal subunits with bis-(2-chloroethyl)-methylamine.

Authors:  W Stiege; C Zwieb; R Brimacombe
Journal:  Nucleic Acids Res       Date:  1982-11-25       Impact factor: 16.971

5.  Localisation of a series of intra-RNA cross-links in the secondary and tertiary structure of 23S RNA, induced by ultraviolet irradiation of Escherichia coli 50S ribosomal subunits.

Authors:  W Stiege; C Glotz; R Brimacombe
Journal:  Nucleic Acids Res       Date:  1983-03-25       Impact factor: 16.971

6.  Investigation of the tertiary folding of Escherichia coli 16S RNA by in situ intra-RNA cross-linking within 30S ribosomal subunits.

Authors:  J Atmadja; R Brimacombe; H Blöcker; R Frank
Journal:  Nucleic Acids Res       Date:  1985-10-11       Impact factor: 16.971
  6 in total

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